Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LUA14_RS08565 Genome accession   NZ_CP089530
Coordinates   1665355..1666254 (+) Length   299 a.a.
NCBI ID   WP_025284725.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LS1-002-014s     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1660355..1671254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA14_RS08545 (LUA14_08545) - 1661045..1662748 (+) 1704 WP_025284723.1 hypothetical protein -
  LUA14_RS08550 (LUA14_08550) - 1662745..1663026 (+) 282 WP_015239847.1 FlhB-like flagellar biosynthesis protein -
  LUA14_RS08555 (LUA14_08555) sucC 1663201..1664358 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  LUA14_RS08560 (LUA14_08560) sucD 1664387..1665289 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  LUA14_RS08565 (LUA14_08565) dprA 1665355..1666254 (+) 900 WP_025284725.1 DNA-processing protein DprA Machinery gene
  LUA14_RS08570 (LUA14_08570) topA 1666436..1668511 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  LUA14_RS08575 (LUA14_08575) trmFO 1668576..1669883 (+) 1308 WP_218791630.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LUA14_RS08580 (LUA14_08580) xerC 1669953..1670870 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32874.02 Da        Isoelectric Point: 8.1570

>NTDB_id=551859 LUA14_RS08565 WP_025284725.1 1665355..1666254(+) (dprA) [Bacillus amyloliquefaciens strain LS1-002-014s]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPNPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTPRCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=551859 LUA14_RS08565 WP_025284725.1 1665355..1666254(+) (dprA) [Bacillus amyloliquefaciens strain LS1-002-014s]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGAATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCCGCTTCTTGAAAAAGGCAGAAAAATTGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCCCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.903

100

0.709
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368