Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   J4774_RS17765 Genome accession   NZ_CP072310
Coordinates   3528364..3528648 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain AD8     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3523364..3533648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4774_RS17745 - 3524611..3525519 (+) 909 WP_139890266.1 ketopantoate reductase family protein -
  J4774_RS17750 - 3525549..3526781 (-) 1233 WP_003154560.1 aminopeptidase -
  J4774_RS17755 - 3526882..3527016 (-) 135 WP_003154559.1 protein YkpC -
  J4774_RS17760 mreBH 3527088..3528095 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  J4774_RS17765 abrB 3528364..3528648 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  J4774_RS17770 - 3528821..3530125 (+) 1305 WP_014304932.1 ATP-binding protein -
  J4774_RS17775 - 3530127..3530954 (+) 828 WP_063174792.1 gamma-glutamylcyclotransferase family protein -
  J4774_RS17780 ktrC 3530995..3531660 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  J4774_RS17785 ade 3531809..3533542 (+) 1734 WP_109567464.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=551852 J4774_RS17765 WP_024085249.1 3528364..3528648(+) (abrB) [Bacillus velezensis strain AD8]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=551852 J4774_RS17765 WP_024085249.1 3528364..3528648(+) (abrB) [Bacillus velezensis strain AD8]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543