Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpE   Type   Regulator
Locus tag   LUA14_RS07325 Genome accession   NZ_CP089530
Coordinates   1377782..1379878 (-) Length   698 a.a.
NCBI ID   WP_218791612.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LS1-002-014s     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context

Location: 1372782..1384878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA14_RS07300 (LUA14_07300) - 1373370..1373630 (+) 261 WP_003154690.1 aspartyl-phosphate phosphatase Spo0E family protein -
  LUA14_RS07305 (LUA14_07305) - 1373842..1375359 (-) 1518 WP_046559543.1 ATP-binding protein -
  LUA14_RS07310 (LUA14_07310) - 1375558..1376004 (+) 447 WP_007408463.1 MarR family winged helix-turn-helix transcriptional regulator -
  LUA14_RS07315 (LUA14_07315) motB 1376040..1376825 (-) 786 WP_003154685.1 flagellar motor protein MotB -
  LUA14_RS07320 (LUA14_07320) motA 1376797..1377612 (-) 816 WP_007408461.1 flagellar motor stator protein MotA -
  LUA14_RS07325 (LUA14_07325) clpE 1377782..1379878 (-) 2097 WP_218791612.1 ATP-dependent protease ATP-binding subunit ClpE Regulator
  LUA14_RS07330 (LUA14_07330) - 1380280..1381317 (+) 1038 WP_012117417.1 membrane protein -
  LUA14_RS07335 (LUA14_07335) - 1381415..1382536 (+) 1122 WP_061581993.1 hypothetical protein -
  LUA14_RS07340 (LUA14_07340) queC 1382787..1383446 (+) 660 WP_003154679.1 7-cyano-7-deazaguanine synthase QueC -
  LUA14_RS07345 (LUA14_07345) queD 1383447..1383890 (+) 444 WP_007408455.1 6-carboxytetrahydropterin synthase QueD -
  LUA14_RS07350 (LUA14_07350) queE 1383883..1384614 (+) 732 WP_015239741.1 7-carboxy-7-deazaguanine synthase QueE -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 77733.70 Da        Isoelectric Point: 5.2952

>NTDB_id=551847 LUA14_RS07325 WP_218791612.1 1377782..1379878(-) (clpE) [Bacillus amyloliquefaciens strain LS1-002-014s]
MRCQHCQKNEATIRLNMQVNSIQKQFVLCETCYTELTRKPSMSMGPQSFGFPFEQGFAPNQNKQQAGPEKGLLDELAQNV
TNGAKAGLIDPVIGRDHEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIAEGDVPNKLKNKELYLLDVASLVAN
TGIRGQFEERMKQLMNELKERKNGILFIDEIHLLVGAGSAEGSMDAGNILKPALARGELQVIGATTLKEYRQIEKDAALE
RRFQPVMVHEPTIEQAISILEGIKDKYEKYHGVTFSNEAINACVTLSSRYIQDRHLPDKAIDLLDEAGSKANLELDTVNE
EDAAERLKAIDAEKTKALHEENYELAAKLRDEEAALEKQLAQEAPASSPEIGAEHIQAIIEQKTGIPVGKLQADEQVKMK
ELEEHLHQRVIGQEKAVKKVAKAVRRSRAGLKSKNRPVGSFLFVGPTGVGKTELSKTLADELFGTKDSIIRLDMSEYMEK
HAVSKIIGSPPGYVGHDEAGQLTEKVRRNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVLIMTSNA
GTGEKQVKVGFQSEESVLEEQTLIDSLSSFFKPEFLNRFDSIIEFQSLKKEHLVKIVSLLLTELEDTLKERGISLNVTDD
AKEKIAEIGYHPAFGARPLRRTIQELIEDEMTDLLLDDNEIKAFHVVMEEDGIKVRAQ

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=551847 LUA14_RS07325 WP_218791612.1 1377782..1379878(-) (clpE) [Bacillus amyloliquefaciens strain LS1-002-014s]
ATGCGTTGTCAACATTGTCAGAAAAACGAGGCGACGATTCGCCTGAACATGCAAGTCAATTCCATTCAAAAACAATTCGT
TTTATGTGAAACATGTTATACAGAATTAACCCGAAAACCGTCTATGAGCATGGGGCCGCAATCATTCGGATTCCCGTTTG
AGCAAGGTTTCGCTCCCAATCAAAATAAACAGCAGGCCGGCCCTGAAAAAGGCCTGCTCGACGAGCTCGCTCAAAACGTC
ACAAACGGCGCAAAAGCAGGTCTGATTGACCCTGTGATCGGCCGCGATCATGAAGTGGCGCGCGTAATTGAAATTTTGAA
CCGCCGGAATAAAAACAATCCGGTGCTGATCGGTGAGCCGGGCGTCGGTAAAACGGCTATTGCAGAAGGCCTCGCGCTTA
AAATCGCTGAAGGCGATGTGCCGAACAAATTGAAAAACAAAGAGCTTTACCTGCTTGACGTCGCTTCTCTCGTCGCCAAT
ACAGGGATCAGAGGCCAGTTTGAAGAAAGAATGAAACAATTAATGAACGAATTAAAAGAACGGAAAAACGGCATTTTGTT
CATTGACGAGATTCACCTTCTTGTAGGCGCCGGCTCTGCCGAGGGTTCAATGGATGCCGGGAACATCCTGAAACCGGCGC
TTGCCAGAGGCGAGCTGCAGGTCATCGGGGCGACAACGCTGAAAGAGTACCGCCAGATTGAAAAAGATGCGGCGCTTGAA
AGACGCTTCCAGCCTGTCATGGTTCACGAGCCTACAATAGAACAAGCCATCAGCATTCTGGAAGGCATTAAAGATAAATA
CGAGAAATACCACGGCGTCACATTCAGCAATGAAGCGATAAACGCCTGTGTTACGCTTTCATCCCGTTACATTCAGGACC
GCCACCTGCCGGATAAAGCGATCGACTTATTAGATGAAGCCGGCTCTAAGGCGAACCTGGAGCTTGATACCGTAAATGAA
GAAGATGCGGCTGAGAGACTCAAAGCAATTGACGCGGAGAAAACAAAAGCGCTTCATGAAGAAAATTATGAGCTTGCCGC
GAAACTGCGTGATGAAGAAGCGGCGTTGGAAAAGCAGCTGGCACAAGAAGCTCCGGCCTCTTCACCTGAAATCGGGGCGG
AGCATATTCAAGCCATCATTGAACAGAAAACAGGCATTCCGGTCGGAAAACTCCAGGCTGATGAACAAGTCAAAATGAAG
GAACTTGAAGAGCATCTTCATCAGCGCGTCATCGGTCAGGAAAAAGCCGTGAAAAAAGTGGCGAAAGCGGTCAGACGAAG
CCGCGCCGGCTTAAAATCCAAAAACAGACCTGTCGGCTCCTTCCTCTTTGTCGGACCGACCGGAGTCGGAAAAACCGAGT
TATCAAAGACACTCGCAGATGAACTGTTCGGTACAAAAGATTCCATTATCCGTCTCGATATGAGTGAATACATGGAAAAA
CACGCCGTATCAAAAATCATCGGTTCACCGCCGGGATATGTCGGACACGATGAAGCCGGTCAATTAACGGAAAAAGTGCG
CCGCAATCCGTACAGCATCGTGCTGCTCGATGAGATTGAAAAAGCCCACCCTGATGTCCAGCATATGTTTCTGCAGATTA
TGGAGGACGGCCGTCTGACAGACAGCCAGGGCAGAACGGTCAGCTTCAAAGATACCGTTTTGATTATGACAAGCAACGCT
GGAACCGGCGAAAAACAGGTGAAAGTCGGATTCCAATCTGAAGAGAGCGTCTTGGAAGAACAAACGCTGATTGATTCACT
GAGCTCGTTCTTCAAACCGGAGTTTTTAAACCGGTTTGACAGCATCATTGAATTCCAATCCCTGAAAAAAGAACATCTCG
TGAAAATCGTCAGCCTGCTTCTCACAGAGCTTGAAGACACATTAAAAGAGCGCGGCATCAGCCTGAACGTCACCGATGAT
GCGAAAGAAAAAATCGCTGAAATCGGCTACCACCCAGCTTTCGGAGCACGCCCGCTCAGAAGAACCATCCAAGAATTGAT
CGAGGACGAAATGACAGATCTCTTATTGGATGACAACGAAATAAAAGCCTTCCATGTCGTAATGGAAGAGGACGGCATCA
AAGTCCGGGCACAATAA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(436-602)

AAA lid domain (AAA_lid_9)

(252-351)

ATPase family associated with various cellular activities (AAA) (AAA)

(115-246)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(608-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

56.735

100

0.597
  clpC Lactococcus lactis subsp. cremoris KW2

56.267

100

0.592
  clpE Streptococcus pneumoniae Rx1

55.995

100

0.589
  clpE Streptococcus pneumoniae R6

55.995

100

0.589
  clpE Streptococcus pneumoniae D39

55.995

100

0.589
  clpE Streptococcus pneumoniae TIGR4

55.995

100

0.589
  clpC Bacillus subtilis subsp. subtilis str. 168

54.003

91.261

0.493
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.154

91.261

0.421
  clpC Streptococcus thermophilus LMD-9

44.154

93.123

0.411
  clpC Streptococcus pneumoniae TIGR4

45.719

88.682

0.405
  clpC Streptococcus pneumoniae Rx1

45.719

88.682

0.405
  clpC Streptococcus pneumoniae D39

45.719

88.682

0.405
  clpC Streptococcus thermophilus LMG 18311

43.538

93.123

0.405
  clpC Streptococcus mutans UA159

44.3

87.966

0.39