Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   LUA14_RS06660 Genome accession   NZ_CP089530
Coordinates   1259299..1259970 (+) Length   223 a.a.
NCBI ID   WP_015417275.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LS1-002-014s     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1254299..1264970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA14_RS06645 (LUA14_06645) - 1255106..1256104 (+) 999 WP_025284595.1 LacI family DNA-binding transcriptional regulator -
  LUA14_RS06650 (LUA14_06650) - 1256180..1257625 (+) 1446 WP_072588993.1 tagaturonate reductase -
  LUA14_RS06655 (LUA14_06655) - 1257622..1259115 (+) 1494 WP_032871252.1 UxaA family hydrolase -
  LUA14_RS06660 (LUA14_06660) scnR 1259299..1259970 (+) 672 WP_015417275.1 response regulator transcription factor Regulator
  LUA14_RS06665 (LUA14_06665) - 1259967..1261325 (+) 1359 WP_025284598.1 sensor histidine kinase -
  LUA14_RS06670 (LUA14_06670) - 1261445..1261627 (+) 183 Protein_1255 ATP-binding cassette domain-containing protein -
  LUA14_RS06675 (LUA14_06675) - 1261787..1261978 (+) 192 WP_025284599.1 hypothetical protein -
  LUA14_RS06685 (LUA14_06685) - 1263342..1264106 (-) 765 WP_020955677.1 sulfite exporter TauE/SafE family protein -
  LUA14_RS06690 (LUA14_06690) - 1264251..1264718 (-) 468 WP_025284602.1 DinB family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 26364.65 Da        Isoelectric Point: 6.6664

>NTDB_id=551843 LUA14_RS06660 WP_015417275.1 1259299..1259970(+) (scnR) [Bacillus amyloliquefaciens strain LS1-002-014s]
MNNILYIEDDQEIGQFVKGDLEDRGYMIIWLTSSYNYETYIEKADLIVLDIMMPGLDGFTIGQRMKKTHPQIPLLLLTAR
TGLEDKLKGLGFADDYVTKPFHPDELAARIEVLLRRFDKTAIHELKLKHLSVHLKEKRILNHQSHEEIFLTDKQLRIFLL
LLRHPNQILTKEQIYENIWEQPYIEGDKTLMVHIRHLRQKIEINPNEPEILETIRGIGYRIKQ

Nucleotide


Download         Length: 672 bp        

>NTDB_id=551843 LUA14_RS06660 WP_015417275.1 1259299..1259970(+) (scnR) [Bacillus amyloliquefaciens strain LS1-002-014s]
ATGAATAACATTTTATACATTGAAGATGACCAAGAAATTGGCCAATTTGTAAAAGGTGATTTAGAAGATCGGGGCTATAT
GATTATATGGCTCACTTCTTCCTATAATTACGAAACATATATAGAAAAGGCTGATCTGATCGTGCTTGATATAATGATGC
CCGGTTTAGACGGATTTACAATCGGTCAAAGGATGAAAAAAACACATCCGCAGATCCCGCTCTTGCTTTTAACAGCCAGA
ACGGGTCTGGAAGATAAGCTGAAAGGCTTAGGATTTGCGGATGATTACGTGACAAAGCCCTTTCATCCCGATGAACTGGC
TGCTCGAATCGAAGTATTATTAAGAAGATTTGACAAGACTGCCATTCATGAATTGAAGCTAAAACACTTAAGTGTTCACT
TGAAAGAAAAAAGAATTTTAAATCATCAAAGTCATGAGGAAATATTTTTAACTGATAAGCAGTTAAGGATTTTTTTGCTT
TTGCTTAGACATCCCAATCAAATATTAACAAAGGAACAAATTTATGAAAATATTTGGGAACAGCCTTATATCGAAGGGGA
TAAGACGTTGATGGTACATATCCGGCATTTACGGCAAAAAATCGAGATCAATCCAAATGAGCCGGAAATTCTTGAAACAA
TCAGAGGGATTGGATACAGGATCAAACAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-221)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

36

100

0.363