Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   J4774_RS10810 Genome accession   NZ_CP072310
Coordinates   2189766..2190056 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain AD8     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2184766..2195056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4774_RS10770 darA 2184783..2185112 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  J4774_RS10775 - 2185125..2185565 (+) 441 WP_004264730.1 DUF327 family protein -
  J4774_RS10780 holB 2185577..2186566 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  J4774_RS10785 ricT 2186569..2187396 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  J4774_RS10790 yabA 2187411..2187770 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  J4774_RS10795 - 2187831..2188574 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  J4774_RS10800 - 2188561..2188860 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  J4774_RS10805 rsmI 2188835..2189716 (+) 882 WP_070081259.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  J4774_RS10810 abrB 2189766..2190056 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  J4774_RS10815 metG 2190539..2192530 (+) 1992 WP_139890525.1 methionine--tRNA ligase -
  J4774_RS10820 - 2192606..2193373 (+) 768 WP_004264700.1 TatD family hydrolase -
  J4774_RS10825 - 2193508..2194833 (+) 1326 WP_088005470.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=551824 J4774_RS10810 WP_169510469.1 2189766..2190056(-) (abrB) [Bacillus velezensis strain AD8]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=551824 J4774_RS10810 WP_169510469.1 2189766..2190056(-) (abrB) [Bacillus velezensis strain AD8]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979