Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   J4774_RS08825 Genome accession   NZ_CP072310
Coordinates   1801375..1802520 (+) Length   381 a.a.
NCBI ID   WP_088037228.1    Uniprot ID   -
Organism   Bacillus velezensis strain AD8     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1796375..1807520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4774_RS08805 - 1796849..1797565 (-) 717 WP_014306017.1 Crp/Fnr family transcriptional regulator -
  J4774_RS08810 narK 1797663..1798853 (-) 1191 WP_014306018.1 nitrate transporter NarK -
  J4774_RS08815 argS 1798988..1800658 (-) 1671 WP_003151071.1 arginine--tRNA ligase -
  J4774_RS08820 - 1800655..1801083 (-) 429 WP_003151069.1 DUF1934 family protein -
  J4774_RS08825 rapF 1801375..1802520 (+) 1146 WP_088037228.1 tetratricopeptide repeat protein Regulator
  J4774_RS08830 - 1802504..1802623 (+) 120 WP_003151066.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  J4774_RS08835 - 1802822..1803025 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  J4774_RS08840 - 1803039..1803242 (+) 204 WP_003151062.1 hypothetical protein -
  J4774_RS19230 - 1803277..1803462 (+) 186 Protein_1750 DUF4177 domain-containing protein -
  J4774_RS08845 - 1803650..1803931 (+) 282 WP_003151060.1 hypothetical protein -
  J4774_RS08850 - 1803975..1804487 (+) 513 WP_003151059.1 stage II sporulation protein M -
  J4774_RS08855 - 1805078..1805296 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  J4774_RS08860 speB 1805467..1806339 (-) 873 WP_003151054.1 agmatinase -
  J4774_RS08865 speE 1806399..1807229 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45325.46 Da        Isoelectric Point: 4.9264

>NTDB_id=551818 J4774_RS08825 WP_088037228.1 1801375..1802520(+) (rapF) [Bacillus velezensis strain AD8]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELDQREYLSAIKFFKKAETKLSFIKDTIDKAEYFFKMSEVYYYLKQTYVS
TDYARQAYEIYKAQSSYDIRLIQCQSLFGANFLDLKLYDRAITHFQKAFSLAETEKQPQLMGRTLYNIALCKQSLNDYEA
AITYVEKAIDVFESAKMTPSLPQAYFLMTQIHYKLERYDKALEYHKKGVIYSEESADSVYLHEFEFLKSLYVNGPDEDAM
KRSFDFLESKMMYADIEDFALDAAKYYHKLEDYKKASTYFLKVEEARQHIQGGVTFYEAEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=551818 J4774_RS08825 WP_088037228.1 1801375..1802520(+) (rapF) [Bacillus velezensis strain AD8]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTCGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGATCAGCGGGAATATTTGTCGGCTATAAAATTTTTTAAAAAGGCTGAGACGAAACTCTCATTTA
TTAAGGATACTATTGATAAAGCCGAGTACTTTTTCAAGATGTCTGAAGTCTACTACTATTTGAAACAAACGTATGTATCT
ACCGATTACGCAAGGCAGGCATATGAAATATATAAAGCTCAGTCGTCATACGATATCAGGCTCATACAATGCCAATCCTT
ATTCGGAGCAAATTTCCTGGATTTAAAACTATATGATCGGGCAATTACTCACTTTCAAAAGGCTTTTTCTTTGGCAGAAA
CAGAAAAACAGCCTCAATTAATGGGCAGGACGCTGTATAACATCGCACTTTGCAAACAAAGCCTGAACGACTATGAAGCA
GCTATAACTTATGTTGAAAAAGCCATTGATGTTTTTGAAAGTGCTAAAATGACCCCTTCTTTGCCCCAAGCATATTTTTT
AATGACACAGATTCATTATAAATTAGAAAGATACGACAAAGCGCTCGAGTATCATAAAAAAGGAGTTATCTATTCCGAAG
AGTCAGCAGATTCAGTTTATTTACACGAATTCGAATTTTTAAAATCTTTGTATGTGAACGGACCTGATGAGGATGCAATG
AAACGGAGTTTTGACTTTTTGGAAAGTAAGATGATGTATGCAGATATAGAAGATTTTGCTCTTGATGCAGCTAAATATTA
TCACAAACTTGAAGATTATAAAAAAGCTTCAACATACTTTTTAAAAGTTGAAGAAGCAAGACAGCATATTCAAGGGGGGG
TAACTTTTTATGAAGCTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(223-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

74.541

100

0.745
  rapC Bacillus subtilis subsp. subtilis str. 168

53.158

99.738

0.53