Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   J4774_RS07880 Genome accession   NZ_CP072310
Coordinates   1614671..1615360 (-) Length   229 a.a.
NCBI ID   WP_197080391.1    Uniprot ID   -
Organism   Bacillus velezensis strain AD8     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1609671..1620360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4774_RS07845 fliW 1609762..1610193 (-) 432 WP_063174505.1 flagellar assembly protein FliW -
  J4774_RS07850 - 1610223..1610792 (-) 570 WP_003151397.1 DUF6470 family protein -
  J4774_RS07855 flgL 1610883..1611800 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  J4774_RS07860 flgK 1611812..1613329 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  J4774_RS07865 - 1613345..1613827 (-) 483 WP_024085863.1 flagellar protein FlgN -
  J4774_RS07870 flgM 1613842..1614108 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  J4774_RS07875 - 1614178..1614597 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  J4774_RS07880 comFC 1614671..1615360 (-) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  J4774_RS07885 - 1615366..1615650 (-) 285 WP_003151389.1 competence protein ComFB -
  J4774_RS07890 comFA 1615708..1617093 (-) 1386 WP_139889935.1 DEAD/DEAH box helicase Machinery gene
  J4774_RS07895 - 1617200..1618048 (-) 849 WP_139889934.1 DegV family protein -
  J4774_RS07900 degU 1618146..1618835 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  J4774_RS07905 degS 1618912..1620075 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25340.04 Da        Isoelectric Point: 8.4899

>NTDB_id=551811 J4774_RS07880 WP_197080391.1 1614671..1615360(-) (comFC) [Bacillus velezensis strain AD8]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEDPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKHSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=551811 J4774_RS07880 WP_197080391.1 1614671..1615360(-) (comFC) [Bacillus velezensis strain AD8]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGACCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGCACTCATTAGCTCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598