Detailed information NTG0551802

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: LUA14_RS01500
• Genome accession: NZ_CP089530
• Coordinates: 269528..270649 (+)
• Length: 373 a.a.
• NCBI ID: WP_007409040.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain LS1-002-014s
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 264528..275649

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LUA14_RS01480 (LUA14_01480)	-	264837..265832 (-)	996	WP_218791472.1	DUF5105 domain-containing protein	-
LUA14_RS01485 (LUA14_01485)	-	265959..267359 (+)	1401	WP_163113929.1	YcdB/YcdC domain-containing protein	-
LUA14_RS01490 (LUA14_01490)	-	267560..268918 (+)	1359	WP_059366517.1	YcdB/YcdC domain-containing protein	-
LUA14_RS01495 (LUA14_01495)	-	268915..269418 (-)	504	WP_011996280.1	M15 family metallopeptidase	-
LUA14_RS01500 (LUA14_01500)	rapF	269528..270649 (+)	1122	WP_007409040.1	tetratricopeptide repeat protein	Regulator
LUA14_RS01505 (LUA14_01505)	-	270765..271544 (+)	780	WP_218791473.1	glucose 1-dehydrogenase	-
LUA14_RS01510 (LUA14_01510)	-	271628..273304 (+)	1677	WP_218791474.1	glycoside hydrolase family 13 protein	-
LUA14_RS01515 (LUA14_01515)	-	273491..274450 (+)	960	WP_015239100.1	metal ABC transporter substrate-binding protein	-
LUA14_RS01520 (LUA14_01520)	-	274505..275200 (+)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44333.53 Da
• Isoelectric Point: 5.0806

>NTDB_id=551802 LUA14_RS01500 WP_007409040.1 269528..270649(+) (rapF) [Bacillus amyloliquefaciens strain LS1-002-014s]
MKSKIPSEEVAVKMNEWYKLIRAFEADQAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=551802 LUA14_RS01500 WP_007409040.1 269528..270649(+) (rapF) [Bacillus amyloliquefaciens strain LS1-002-014s]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TCAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCACATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCTCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAACACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAGCTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402