Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   J4774_RS04160 Genome accession   NZ_CP072310
Coordinates   887177..887929 (-) Length   250 a.a.
NCBI ID   WP_003152643.1    Uniprot ID   A0A6A8LH02
Organism   Bacillus velezensis strain AD8     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 882177..892929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4774_RS04135 mreC 882613..883476 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  J4774_RS04140 mreB 883507..884520 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  J4774_RS04145 radC 884612..885307 (-) 696 WP_003152646.1 DNA repair protein RadC -
  J4774_RS04150 - 885339..885908 (-) 570 WP_014305513.1 Maf family protein -
  J4774_RS04155 - 886049..887050 (-) 1002 WP_003152644.1 SPOR domain-containing protein -
  J4774_RS04160 comC 887177..887929 (-) 753 WP_003152643.1 A24 family peptidase Machinery gene
  J4774_RS04165 - 888069..889361 (-) 1293 WP_014305515.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  J4774_RS04170 - 889420..892062 (-) 2643 WP_209163329.1 valine--tRNA ligase -
  J4774_RS04175 - 892515..892706 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27152.80 Da        Isoelectric Point: 9.2521

>NTDB_id=551800 J4774_RS04160 WP_003152643.1 887177..887929(-) (comC) [Bacillus velezensis strain AD8]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSSCSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGSLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=551800 J4774_RS04160 WP_003152643.1 887177..887929(-) (comC) [Bacillus velezensis strain AD8]
GTGCTTTTAATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTCCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCGGTATACGGTATGTGCGCCGCAGCCCGGGGCAGTCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8LH02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588