Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   J4774_RS03315 Genome accession   NZ_CP072310
Coordinates   728351..729118 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain AD8     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 723351..734118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4774_RS03295 - 723553..724365 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  J4774_RS03300 ccpN 724391..725029 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  J4774_RS03305 glyS 725130..727169 (-) 2040 WP_014305438.1 glycine--tRNA ligase subunit beta -
  J4774_RS03310 glyQ 727162..728049 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  J4774_RS03315 recO 728351..729118 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  J4774_RS03320 - 729155..729298 (-) 144 WP_007408286.1 YqzL family protein -
  J4774_RS03325 era 729454..730359 (-) 906 WP_003152978.1 GTPase Era -
  J4774_RS03330 - 730340..730750 (-) 411 WP_003152976.1 cytidine deaminase -
  J4774_RS03335 - 730874..731248 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  J4774_RS03340 ybeY 731229..731702 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  J4774_RS03345 - 731703..733835 (-) 2133 WP_015387990.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=551793 J4774_RS03315 WP_003152982.1 728351..729118(-) (recO) [Bacillus velezensis strain AD8]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=551793 J4774_RS03315 WP_003152982.1 728351..729118(-) (recO) [Bacillus velezensis strain AD8]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGAAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894