Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   J6I88_RS16980 Genome accession   NZ_CP072305
Coordinates   3542878..3543204 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain KSK Sensitive     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3537878..3548204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6I88_RS16960 (J6I88_16960) - 3537980..3538609 (-) 630 WP_000219965.1 FHA domain-containing protein -
  J6I88_RS16965 (J6I88_16965) gspD 3538650..3540926 (-) 2277 WP_001196435.1 type II secretion system secretin GspD -
  J6I88_RS16970 (J6I88_16970) - 3540968..3541804 (-) 837 WP_000870030.1 type II secretion system protein N -
  J6I88_RS16975 (J6I88_16975) gspN 3541804..3542547 (-) 744 WP_000730345.1 type II secretion system protein N -
  J6I88_RS16980 (J6I88_16980) hns 3542878..3543204 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  J6I88_RS16985 (J6I88_16985) - 3543399..3543839 (-) 441 WP_000661569.1 acyl-CoA thioesterase -
  J6I88_RS16990 (J6I88_16990) - 3543847..3545040 (-) 1194 WP_000681780.1 membrane protein -
  J6I88_RS16995 (J6I88_16995) - 3545050..3545889 (-) 840 WP_001230201.1 hypothetical protein -
  J6I88_RS17000 (J6I88_17000) - 3545898..3546665 (-) 768 WP_000897412.1 uroporphyrinogen-III synthase -
  J6I88_RS17005 (J6I88_17005) hemC 3546670..3547587 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=551766 J6I88_RS16980 WP_000801427.1 3542878..3543204(-) (hns) [Acinetobacter baumannii strain KSK Sensitive]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=551766 J6I88_RS16980 WP_000801427.1 3542878..3543204(-) (hns) [Acinetobacter baumannii strain KSK Sensitive]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1