Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   J6I88_RS02370 Genome accession   NZ_CP072305
Coordinates   480442..481326 (+) Length   294 a.a.
NCBI ID   WP_000914771.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain KSK Sensitive     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 475442..486326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6I88_RS02345 (J6I88_02345) - 475840..477087 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  J6I88_RS02350 (J6I88_02350) wrbA 477375..477968 (+) 594 WP_001183347.1 NAD(P)H:quinone oxidoreductase -
  J6I88_RS02355 (J6I88_02355) - 478021..478596 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  J6I88_RS02360 (J6I88_02360) - 478669..479382 (-) 714 WP_000201544.1 DUF3108 domain-containing protein -
  J6I88_RS02365 (J6I88_02365) - 479540..480211 (-) 672 WP_001193955.1 hypothetical protein -
  J6I88_RS02370 (J6I88_02370) tonB2 480442..481326 (+) 885 WP_000914771.1 energy transducer TonB Machinery gene
  J6I88_RS02375 (J6I88_02375) ybeY 481416..481892 (-) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  J6I88_RS02380 (J6I88_02380) - 481902..482990 (-) 1089 WP_000122983.1 PhoH family protein -
  J6I88_RS02385 (J6I88_02385) miaB 483028..484479 (-) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33573.46 Da        Isoelectric Point: 9.0947

>NTDB_id=551744 J6I88_RS02370 WP_000914771.1 480442..481326(+) (tonB2) [Acinetobacter baumannii strain KSK Sensitive]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIHPTEDVIKHADFLAQADQQGSGA
FRAAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDVNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=551744 J6I88_RS02370 WP_000914771.1 480442..481326(+) (tonB2) [Acinetobacter baumannii strain KSK Sensitive]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCATCCTACTGAAGATGTAATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGAGCT
TTTCGGGCAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGC
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
AAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCATTTGGCCGTTTTGA
TGTAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

98.98

100

0.99