Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   J6I88_RS01530 Genome accession   NZ_CP072305
Coordinates   320934..321674 (+) Length   246 a.a.
NCBI ID   WP_000076102.1    Uniprot ID   A0A1E3MBI9
Organism   Acinetobacter baumannii strain KSK Sensitive     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 315934..326674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6I88_RS01515 (J6I88_01515) ponA 316520..319075 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  J6I88_RS01520 (J6I88_01520) pilM 319238..320296 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  J6I88_RS01525 (J6I88_01525) pilN 320296..320937 (+) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  J6I88_RS01530 (J6I88_01530) pilO 320934..321674 (+) 741 WP_000076102.1 type 4a pilus biogenesis protein PilO Machinery gene
  J6I88_RS01535 (J6I88_01535) pilP 321685..322212 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  J6I88_RS01540 (J6I88_01540) pilQ 322280..324445 (+) 2166 WP_001017031.1 type IV pilus secretin PilQ Machinery gene
  J6I88_RS01545 (J6I88_01545) aroK 324457..325026 (+) 570 WP_000643712.1 shikimate kinase AroK -
  J6I88_RS01550 (J6I88_01550) aroB 325055..326137 (+) 1083 WP_001193998.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27849.61 Da        Isoelectric Point: 4.8357

>NTDB_id=551732 J6I88_RS01530 WP_000076102.1 320934..321674(+) (pilO) [Acinetobacter baumannii strain KSK Sensitive]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGTTDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=551732 J6I88_RS01530 WP_000076102.1 320934..321674(+) (pilO) [Acinetobacter baumannii strain KSK Sensitive]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
TATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGACAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCCTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3MBI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683