Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   J6I88_RS01525 Genome accession   NZ_CP072305
Coordinates   320296..320937 (+) Length   213 a.a.
NCBI ID   WP_000201223.1    Uniprot ID   N9LAP0
Organism   Acinetobacter baumannii strain KSK Sensitive     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 315296..325937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6I88_RS01505 (J6I88_01505) - 315343..315675 (+) 333 WP_000169602.1 hypothetical protein -
  J6I88_RS01510 (J6I88_01510) - 315678..316502 (+) 825 WP_002019666.1 putative RNA methyltransferase -
  J6I88_RS01515 (J6I88_01515) ponA 316520..319075 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  J6I88_RS01520 (J6I88_01520) pilM 319238..320296 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  J6I88_RS01525 (J6I88_01525) pilN 320296..320937 (+) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  J6I88_RS01530 (J6I88_01530) pilO 320934..321674 (+) 741 WP_000076102.1 type 4a pilus biogenesis protein PilO Machinery gene
  J6I88_RS01535 (J6I88_01535) pilP 321685..322212 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  J6I88_RS01540 (J6I88_01540) pilQ 322280..324445 (+) 2166 WP_001017031.1 type IV pilus secretin PilQ Machinery gene
  J6I88_RS01545 (J6I88_01545) aroK 324457..325026 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23999.36 Da        Isoelectric Point: 5.3968

>NTDB_id=551731 J6I88_RS01525 WP_000201223.1 320296..320937(+) (pilN) [Acinetobacter baumannii strain KSK Sensitive]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=551731 J6I88_RS01525 WP_000201223.1 320296..320937(+) (pilN) [Acinetobacter baumannii strain KSK Sensitive]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704