Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   B938_RS14650 Genome accession   NC_019842
Coordinates   3027197..3027841 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis AS43.3     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3022197..3032841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B938_RS14615 (B938_14675) - 3023382..3023813 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  B938_RS14620 (B938_14680) - 3023813..3024154 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  B938_RS14625 (B938_14685) - 3024147..3025628 (+) 1482 WP_015240481.1 Na+/H+ antiporter subunit D -
  B938_RS14630 (B938_14690) - 3025634..3026110 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  B938_RS14635 (B938_14695) - 3026110..3026394 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  B938_RS14640 (B938_14700) mnhG 3026378..3026752 (+) 375 WP_015240482.1 monovalent cation/H(+) antiporter subunit G -
  B938_RS14645 (B938_14705) - 3026792..3027175 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  B938_RS14650 (B938_14710) comA 3027197..3027841 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  B938_RS14655 (B938_14715) comP 3027922..3030228 (-) 2307 WP_015240483.1 sensor histidine kinase Regulator
  B938_RS14660 (B938_14720) comX 3030247..3030423 (-) 177 WP_015240484.1 competence pheromone ComX -
  B938_RS14665 (B938_14725) - 3030550..3031335 (-) 786 WP_227590172.1 polyprenyl synthetase family protein -
  B938_RS14670 (B938_14730) degQ 3031466..3031606 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  B938_RS14680 (B938_14740) - 3032072..3032413 (+) 342 WP_007408677.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=55170 B938_RS14650 WP_003152052.1 3027197..3027841(-) (comA) [Bacillus velezensis AS43.3]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=55170 B938_RS14650 WP_003152052.1 3027197..3027841(-) (comA) [Bacillus velezensis AS43.3]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGACAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment