Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   B938_RS08360 Genome accession   NC_019842
Coordinates   1657686..1658585 (+) Length   299 a.a.
NCBI ID   WP_015239848.1    Uniprot ID   -
Organism   Bacillus velezensis AS43.3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1652686..1663585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B938_RS08340 (B938_08255) - 1653376..1655079 (+) 1704 WP_015239846.1 hypothetical protein -
  B938_RS08345 (B938_08260) - 1655076..1655357 (+) 282 WP_015239847.1 FlhB-like flagellar biosynthesis protein -
  B938_RS08350 (B938_08265) sucC 1655532..1656689 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  B938_RS08355 (B938_08270) sucD 1656718..1657620 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  B938_RS08360 (B938_08275) dprA 1657686..1658585 (+) 900 WP_015239848.1 DNA-processing protein DprA Machinery gene
  B938_RS08365 (B938_08285) topA 1658767..1660842 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  B938_RS08370 (B938_08290) trmFO 1660907..1662214 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  B938_RS08375 (B938_08295) xerC 1662284..1663201 (+) 918 WP_015239850.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32831.98 Da        Isoelectric Point: 8.1570

>NTDB_id=55145 B938_RS08360 WP_015239848.1 1657686..1658585(+) (dprA) [Bacillus velezensis AS43.3]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPNPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITAI
PISSSRYPTWLKAIYDPPAVLYAKGNPLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=55145 B938_RS08360 WP_015239848.1 1657686..1658585(+) (dprA) [Bacillus velezensis AS43.3]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGAATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGCCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACCC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.903

100

0.709
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368

Multiple sequence alignment