Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   J6E47_RS18040 Genome accession   NZ_CP072270
Coordinates   3777584..3777910 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain KSK6     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3772584..3782910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6E47_RS18020 (J6E47_18020) - 3772690..3773319 (-) 630 WP_045544623.1 FHA domain-containing protein -
  J6E47_RS18025 (J6E47_18025) gspD 3773360..3775630 (-) 2271 WP_045544624.1 type II secretion system secretin GspD -
  J6E47_RS18030 (J6E47_18030) - 3775672..3776508 (-) 837 WP_045544625.1 type II secretion system protein N -
  J6E47_RS18035 (J6E47_18035) gspN 3776508..3777251 (-) 744 WP_045544626.1 type II secretion system protein N -
  J6E47_RS18040 (J6E47_18040) hns 3777584..3777910 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  J6E47_RS18045 (J6E47_18045) - 3778105..3778545 (-) 441 WP_000661569.1 acyl-CoA thioesterase -
  J6E47_RS18050 (J6E47_18050) - 3778553..3779746 (-) 1194 WP_045544627.1 membrane protein -
  J6E47_RS18055 (J6E47_18055) - 3779756..3780595 (-) 840 WP_045544628.1 hypothetical protein -
  J6E47_RS18060 (J6E47_18060) - 3780604..3781371 (-) 768 WP_000897410.1 uroporphyrinogen-III synthase -
  J6E47_RS18065 (J6E47_18065) hemC 3781376..3782293 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=551438 J6E47_RS18040 WP_000801427.1 3777584..3777910(-) (hns) [Acinetobacter baumannii strain KSK6]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=551438 J6E47_RS18040 WP_000801427.1 3777584..3777910(-) (hns) [Acinetobacter baumannii strain KSK6]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1