Detailed information NTG0551422

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: J6E47_RS10630
• Genome accession: NZ_CP072270
• Coordinates: 2218813..2219514 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain KSK6
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2213813..2224514

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J6E47_RS10600 (J6E47_10600)	-	2214120..2214563 (-)	444	WP_045544205.1	SRPBCC family protein	-
J6E47_RS10605 (J6E47_10605)	tadA	2214633..2215136 (-)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
J6E47_RS10610 (J6E47_10610)	-	2215143..2216267 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
J6E47_RS10615 (J6E47_10615)	ung	2216264..2216977 (-)	714	WP_001177530.1	uracil-DNA glycosylase	-
J6E47_RS10620 (J6E47_10620)	-	2217028..2217624 (-)	597	WP_000908453.1	6-pyruvoyl trahydropterin synthase family protein	-
J6E47_RS10625 (J6E47_10625)	gspK	2217854..2218813 (-)	960	WP_045544206.1	type II secretion system minor pseudopilin GspK	-
J6E47_RS10630 (J6E47_10630)	xcpW	2218813..2219514 (-)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
J6E47_RS10635 (J6E47_10635)	xcpV	2219514..2219894 (-)	381	WP_045544207.1	type II secretion system minor pseudopilin GspI	Machinery gene
J6E47_RS10640 (J6E47_10640)	-	2219884..2220438 (-)	555	WP_000841373.1	type II secretion system protein	-
J6E47_RS10645 (J6E47_10645)	-	2220448..2221056 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
J6E47_RS10650 (J6E47_10650)	-	2221094..2221867 (-)	774	WP_000497298.1	TatD family hydrolase	-
J6E47_RS10655 (J6E47_10655)	-	2221885..2222226 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
J6E47_RS10660 (J6E47_10660)	-	2222238..2223218 (-)	981	WP_045544208.1	DNA polymerase III subunit delta'	-
J6E47_RS10665 (J6E47_10665)	kdsB	2223230..2223991 (-)	762	WP_045544209.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=551422 J6E47_RS10630 WP_000594572.1 2218813..2219514(-) (xcpW) [Acinetobacter baumannii strain KSK6]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=551422 J6E47_RS10630 WP_000594572.1 2218813..2219514(-) (xcpW) [Acinetobacter baumannii strain KSK6]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991