Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   B938_RS07310 Genome accession   NC_019842
Coordinates   1407468..1407932 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis AS43.3     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1402468..1412932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B938_RS07295 (B938_07165) - 1402949..1404769 (+) 1821 WP_015239755.1 PAS domain-containing protein -
  B938_RS07300 (B938_07170) - 1404750..1405963 (-) 1214 Protein_1402 aminotransferase A -
  B938_RS20240 (B938_07175) - 1406164..1406325 (-) 162 WP_007409608.1 hypothetical protein -
  B938_RS07305 (B938_07180) cheV 1406514..1407425 (+) 912 WP_015239756.1 chemotaxis protein CheV -
  B938_RS07310 (B938_07185) kre 1407468..1407932 (-) 465 WP_003154622.1 YkyB family protein Regulator
  B938_RS07315 (B938_07190) - 1408055..1409347 (-) 1293 WP_015239757.1 MFS transporter -
  B938_RS07320 (B938_07195) - 1409423..1409917 (-) 495 WP_088462390.1 L,D-transpeptidase family protein -
  B938_RS07325 (B938_07200) - 1409992..1410855 (-) 864 WP_015239758.1 metallophosphoesterase -
  B938_RS07330 (B938_07205) fadH 1411000..1411764 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  B938_RS07335 (B938_07210) - 1411929..1412381 (+) 453 WP_082186552.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=55142 B938_RS07310 WP_003154622.1 1407468..1407932(-) (kre) [Bacillus velezensis AS43.3]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=55142 B938_RS07310 WP_003154622.1 1407468..1407932(-) (kre) [Bacillus velezensis AS43.3]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAGTCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment