Detailed information    

insolico Bioinformatically predicted

Overview


Name   recU   Type   Machinery gene
Locus tag   ANG_RS08950 Genome accession   NZ_AP013072
Coordinates   1783044..1783646 (+) Length   200 a.a.
NCBI ID   WP_003036440.1    Uniprot ID   I0SDJ5
Organism   Streptococcus anginosus subsp. whileyi MAS624     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1778044..1788646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ANG_RS08925 (ANG_1816) ahpC 1778261..1778827 (-) 567 WP_003036466.1 alkyl hydroperoxide reductase subunit C -
  ANG_RS08930 (ANG_1817) - 1778930..1780432 (-) 1503 WP_025271945.1 cell division site-positioning protein MapZ family protein -
  ANG_RS08935 (ANG_1818) - 1780445..1781599 (-) 1155 WP_025271946.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  ANG_RS08940 (ANG_1819) gpsB 1782036..1782377 (-) 342 WP_003036439.1 cell division regulator GpsB -
  ANG_RS08945 (ANG_1820) - 1782447..1782974 (-) 528 WP_003036467.1 DUF1273 domain-containing protein -
  ANG_RS08950 (ANG_1821) recU 1783044..1783646 (+) 603 WP_003036440.1 Holliday junction resolvase RecU Machinery gene
  ANG_RS08955 (ANG_1822) pbp1a 1783639..1785807 (+) 2169 WP_003036437.1 penicillin-binding protein PBP1A -
  ANG_RS08960 (ANG_1823) pepC 1786123..1787460 (-) 1338 WP_003036473.1 aminopeptidase C -
  ANG_RS08965 (ANG_1824) nadE 1787608..1788432 (-) 825 WP_003036452.1 ammonia-dependent NAD(+) synthetase -

Sequence


Protein


Download         Length: 200 a.a.        Molecular weight: 23103.74 Da        Isoelectric Point: 10.0398

>NTDB_id=55142 ANG_RS08950 WP_003036440.1 1783044..1783646(+) (recU) [Streptococcus anginosus subsp. whileyi MAS624]
MVNYPHKVPSRNSLRLPKKKSVDFANRGMSFEKMINETNDYYLSHDLAVIHKKPTPIQIVKVDYPRRSRAKIVEAYFRQA
STTDYSGVYQGHYIDFEAKETHQKASMPMKNFHAHQIKHMEQVVKQGGICFVLLHFSALKLTYLLPAPYLINFFKIDKGK
NSMPLDYIQKHGYSISQNGLPSIPYLEIIQQNLLGGKTNE

Nucleotide


Download         Length: 603 bp        

>NTDB_id=55142 ANG_RS08950 WP_003036440.1 1783044..1783646(+) (recU) [Streptococcus anginosus subsp. whileyi MAS624]
ATGGTCAACTATCCACATAAAGTTCCCTCTCGAAATTCATTAAGACTTCCCAAAAAGAAGTCCGTTGACTTTGCGAATCG
GGGAATGTCGTTTGAAAAAATGATCAATGAAACGAATGATTATTATCTTAGTCACGATTTAGCGGTCATTCACAAGAAAC
CAACCCCTATTCAGATTGTAAAAGTGGATTATCCCAGACGTAGTCGGGCAAAAATTGTTGAAGCCTACTTTCGACAAGCC
TCTACAACAGACTATTCTGGTGTCTATCAAGGACATTATATAGATTTTGAAGCAAAAGAAACACATCAAAAGGCTTCCAT
GCCGATGAAAAATTTTCATGCTCATCAAATCAAGCACATGGAACAAGTCGTCAAACAAGGAGGAATTTGTTTCGTTTTAT
TGCACTTTTCAGCCTTAAAATTGACATATCTACTTCCTGCTCCTTATTTAATTAACTTCTTCAAGATTGACAAGGGGAAA
AATTCCATGCCACTTGACTACATTCAAAAGCATGGATATTCTATCTCACAGAATGGTCTTCCTAGCATTCCGTATCTTGA
AATCATTCAACAAAATTTACTAGGTGGTAAAACAAATGAATAA

Domains


Predicted by InterProScan.

(27-190)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB I0SDJ5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.249

100

0.505


Multiple sequence alignment