Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   ANG_RS07970 Genome accession   NZ_AP013072
Coordinates   1585837..1586868 (-) Length   343 a.a.
NCBI ID   WP_038677310.1    Uniprot ID   -
Organism   Streptococcus anginosus subsp. whileyi MAS624     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1580837..1591868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ANG_RS07950 (ANG_1616) - 1581646..1582215 (-) 570 WP_080553209.1 LURP-one-related/scramblase family protein -
  ANG_RS07955 (ANG_1617) prsA 1582353..1583291 (-) 939 WP_025271892.1 peptidylprolyl isomerase PrsA -
  ANG_RS07960 (ANG_1618) - 1583398..1584081 (-) 684 WP_003037234.1 O-methyltransferase -
  ANG_RS07965 (ANG_1619) pepF 1584083..1585885 (-) 1803 WP_025271893.1 oligoendopeptidase F Regulator
  ANG_RS07970 (ANG_1620) coiA 1585837..1586868 (-) 1032 WP_038677310.1 competence protein CoiA Machinery gene
  ANG_RS07975 (ANG_1621) celB 1587191..1588534 (-) 1344 WP_038677312.1 PTS cellobiose transporter subunit IIC -
  ANG_RS07980 (ANG_1622) - 1588574..1589080 (-) 507 WP_025271895.1 hypothetical protein -
  ANG_RS07985 (ANG_1623) - 1589103..1589420 (-) 318 WP_025271896.1 PTS cellobiose transporter subunit IIA -
  ANG_RS07990 (ANG_1624) - 1589433..1591424 (-) 1992 WP_025271897.1 BglG family transcription antiterminator -
  ANG_RS07995 (ANG_1625) - 1591480..1591794 (-) 315 WP_003037418.1 PTS cellobiose transporter subunit IIB -

Sequence


Protein


Download         Length: 343 a.a.        Molecular weight: 40743.92 Da        Isoelectric Point: 9.0083

>NTDB_id=55127 ANG_RS07970 WP_038677310.1 1585837..1586868(-) (coiA) [Streptococcus anginosus subsp. whileyi MAS624]
MLMACQENGKMLNAVEDTVNPLDRFLCPACKEAVRFKNGKVMRPHFAHISLKECHFYTENESAEHLNLKAALFTWARKSN
HAIQVEAYLPELQQIADLLVEKQIALEVQCSSLSQKRLKERTDSYRQHGYRVLWLLGKKLWLKDSLTNLQKDFLYFSQNM
GFHLWELDEQQQLLRLKYLIHEDLHGKVQYKEKNFAFGKGNLLDIFRQPFCKQEMTSFLAKEDKNICSYVRQQLYYQQPK
WMKWQAELYQTGDNLLTKTASDFYPQVQPVRASSFCQIFQDLTPYYQQFSAYYEKEKNKNLQILYPPAFYAKIFGNIYDR
IGRTEEILWQNKEMKLKKNTLGT

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=55127 ANG_RS07970 WP_038677310.1 1585837..1586868(-) (coiA) [Streptococcus anginosus subsp. whileyi MAS624]
ATGTTAATGGCTTGTCAGGAAAACGGAAAAATGCTAAATGCTGTGGAAGATACGGTAAATCCATTGGATAGGTTTCTCTG
CCCGGCTTGTAAGGAAGCGGTGCGATTTAAAAATGGCAAGGTGATGCGACCGCATTTTGCTCATATTTCTTTAAAAGAAT
GTCATTTTTATACGGAAAATGAAAGCGCAGAACACTTGAATTTGAAAGCTGCTTTGTTTACTTGGGCTAGAAAATCCAAT
CATGCGATTCAAGTAGAAGCTTATTTACCAGAATTGCAGCAAATCGCAGATTTGTTAGTTGAAAAACAAATTGCGCTTGA
AGTTCAGTGTAGCTCGCTTAGTCAAAAACGCTTAAAAGAGCGTACGGACAGTTATCGTCAGCATGGTTATCGCGTCCTTT
GGCTCTTGGGAAAGAAACTTTGGCTGAAAGATTCCTTGACCAATTTACAAAAGGACTTTCTCTATTTCAGTCAAAATATG
GGCTTTCATCTATGGGAATTAGACGAACAGCAACAGCTTTTGAGGCTTAAATACTTGATTCATGAAGATTTGCATGGCAA
GGTTCAGTATAAGGAAAAAAATTTTGCTTTTGGTAAAGGAAACCTTTTAGACATCTTTCGTCAGCCATTCTGCAAGCAGG
AAATGACGAGTTTTCTGGCAAAAGAAGATAAAAATATTTGCAGTTATGTGCGCCAGCAGCTCTACTATCAGCAGCCCAAA
TGGATGAAATGGCAAGCAGAATTGTATCAAACGGGTGATAATTTATTGACCAAAACGGCTAGTGACTTTTACCCGCAAGT
CCAACCTGTTCGTGCCAGCTCTTTCTGCCAGATTTTTCAAGATCTCACACCTTATTACCAGCAATTTTCAGCTTATTATG
AAAAAGAAAAAAATAAAAATCTCCAAATTCTCTATCCTCCAGCTTTTTATGCAAAGATTTTTGGCAATATTTATGATAGA
ATAGGAAGGACGGAGGAAATTTTATGGCAAAACAAAGAAATGAAATTGAAGAAAAATACACTTGGGACCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

53.185

91.545

0.487

  coiA Streptococcus pneumoniae Rx1

52.866

91.545

0.484

  coiA Streptococcus pneumoniae D39

52.866

91.545

0.484

  coiA Streptococcus pneumoniae R6

52.866

91.545

0.484

  coiA Streptococcus pneumoniae TIGR4

52.548

91.545

0.481

  coiA Lactococcus lactis subsp. cremoris KW2

44.444

94.461

0.42


Multiple sequence alignment