Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   B938_RS04310 Genome accession   NC_019842
Coordinates   857126..857917 (+) Length   263 a.a.
NCBI ID   WP_015239427.1    Uniprot ID   -
Organism   Bacillus velezensis AS43.3     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 852126..862917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B938_RS04290 (B938_04115) - 854119..855003 (+) 885 WP_015239425.1 PhzF family phenazine biosynthesis isomerase -
  B938_RS04295 (B938_04120) - 855080..855664 (+) 585 WP_015239426.1 nitroreductase family protein -
  B938_RS04300 (B938_04125) - 855705..855896 (-) 192 WP_003155508.1 YfhD family protein -
  B938_RS19355 (B938_04130) - 855967..856077 (-) 111 WP_003155504.1 YfhE family protein -
  B938_RS04305 (B938_04135) - 856135..857034 (-) 900 WP_012117113.1 TIGR01777 family oxidoreductase -
  B938_RS04310 (B938_04140) recX 857126..857917 (+) 792 WP_015239427.1 recombination regulator RecX Regulator
  B938_RS04315 (B938_04145) - 857924..858238 (+) 315 WP_007408553.1 YfhH family protein -
  B938_RS04320 (B938_04150) - 858383..859576 (+) 1194 WP_025284446.1 MFS transporter -
  B938_RS04325 (B938_04155) - 859639..860004 (-) 366 WP_015239428.1 DUF2606 family protein -
  B938_RS04330 (B938_04160) - 859967..860878 (-) 912 WP_015239429.1 trypsin-like serine peptidase -
  B938_RS04335 (B938_04165) - 861026..861178 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  B938_RS04340 (B938_04170) - 861302..861571 (+) 270 WP_003155492.1 YfhJ family protein -
  B938_RS04345 (B938_04175) - 861704..862231 (+) 528 WP_015239430.1 SH3 domain-containing protein -
  B938_RS04350 (B938_04180) - 862317..862652 (+) 336 WP_015239431.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30935.10 Da        Isoelectric Point: 5.8035

>NTDB_id=55127 B938_RS04310 WP_015239427.1 857126..857917(+) (recX) [Bacillus velezensis AS43.3]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYSYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=55127 B938_RS04310 WP_015239427.1 857126..857917(+) (recX) [Bacillus velezensis AS43.3]
ATGCCCTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACAGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAAATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAGGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAGAATGACGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGTTATGACGGCAGCTATGAAAGCGGAATGAAG
GTTAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795

Multiple sequence alignment