Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   INE88_RS10935 Genome accession   NZ_CP072227
Coordinates   2650979..2652346 (-) Length   455 a.a.
NCBI ID   WP_004293482.1    Uniprot ID   A0A414MCC8
Organism   Bacteroides eggerthii strain CL11T00C20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2645979..2657346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INE88_RS10920 (INE88_02208) - 2646727..2648763 (+) 2037 WP_211453904.1 alpha-ketoacid dehydrogenase subunit alpha/beta -
  INE88_RS10925 (INE88_02209) - 2648781..2649287 (+) 507 WP_211453906.1 flavodoxin -
  INE88_RS10930 (INE88_02210) - 2649282..2650904 (-) 1623 WP_004288980.1 FAD-dependent protein -
  INE88_RS10935 (INE88_02211) radA 2650979..2652346 (-) 1368 WP_004293482.1 DNA repair protein RadA Machinery gene
  INE88_RS10940 (INE88_02212) - 2652647..2653687 (-) 1041 WP_004288983.1 type I asparaginase -
  INE88_RS10945 (INE88_02213) thrA 2654223..2656655 (+) 2433 WP_004288985.1 bifunctional aspartate kinase/homoserine dehydrogenase I -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50039.74 Da        Isoelectric Point: 6.4033

>NTDB_id=551236 INE88_RS10935 WP_004293482.1 2650979..2652346(-) (radA) [Bacteroides eggerthii strain CL11T00C20]
MAKEKTVYVCSNCGQESPKWVGKCPSCGEWNTYVEEIVRKETVNKRPVSGIETAKAKPVTLNEIAADDEPRIDLHDAELN
RVLGGGLVQGSLVLIGGEPGIGKSTLVLQTMLQIPEKRILYISGEESARQLKLRADRLTSNSADCLIVCETSLEQIYVHI
KNTRPDLVVIDSIQTISTETLESSPGSIAQVRECSASILRFAKETHTAVILIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLTQDHEGMSGIAIASAIEGIRPFLIETQALVSSAVYGNP
QRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLSVISAILSSNMDTAIEPEICMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFILPKYNMQGLNTSKLKIELIPVRKVEEAFRALFG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=551236 INE88_RS10935 WP_004293482.1 2650979..2652346(-) (radA) [Bacteroides eggerthii strain CL11T00C20]
ATGGCAAAGGAGAAAACAGTCTATGTATGCAGCAACTGCGGACAAGAGTCGCCCAAATGGGTGGGCAAATGCCCGTCGTG
CGGAGAATGGAATACCTATGTGGAAGAGATAGTGCGGAAGGAAACCGTAAACAAGCGTCCGGTATCGGGCATAGAGACAG
CCAAAGCCAAGCCCGTTACTTTAAATGAGATTGCCGCTGACGATGAGCCCCGTATCGACCTGCACGACGCGGAGCTGAAC
CGCGTACTGGGCGGCGGTCTGGTGCAAGGTTCACTGGTATTGATAGGCGGCGAACCGGGCATCGGAAAATCCACGCTGGT
GCTGCAAACCATGCTTCAGATACCGGAGAAACGCATTCTCTACATATCAGGCGAGGAAAGCGCCCGGCAGTTGAAGCTGC
GTGCCGACCGCCTGACAAGCAACTCCGCCGACTGCCTGATTGTCTGTGAGACTTCTTTGGAACAGATCTATGTACACATA
AAGAATACACGTCCCGACCTCGTTGTCATAGACTCCATACAGACCATTTCAACGGAAACGCTCGAATCCTCTCCGGGCAG
CATAGCCCAAGTCAGGGAGTGCTCCGCCTCTATCCTGCGCTTTGCCAAAGAGACGCATACGGCGGTAATCCTTATCGGTC
ACATCAATAAGGAAGGAAGCATTGCCGGTCCCAAAGTGCTGGAACACATCGTAGACACCGTACTTCAGTTTGAAGGCGAC
CAGCATTATATGTACCGCATCCTGCGCAGCATCAAGAACCGCTTCGGAAGCACCGCCGAACTGGGCATCTACGAGATGAG
GCAAGACGGATTGCGGCAGGTGAGCAACCCTTCGGAACTGCTTCTCACCCAAGACCATGAGGGAATGAGCGGCATAGCCA
TTGCTTCCGCCATAGAAGGCATCCGCCCGTTCCTGATAGAGACGCAGGCGTTGGTGAGCAGTGCCGTTTATGGAAATCCG
CAACGCTCCGCCACCGGCTTCGACATACGGAGAATGAATATGCTGCTTGCCGTACTGGAGAAACGCGTCGGCTTCAAGCT
CGCCCAAAAAGATGTATTCCTCAACATTGCCGGCGGACTGAAAGTCAACGACCCCGCCATCGACCTCTCCGTCATCAGCG
CCATCCTCTCCAGCAATATGGACACAGCCATAGAGCCTGAGATATGCATGGCGGGAGAAATAGGGCTGTCCGGTGAAATC
CGCCCCGTCAACCGCATCGAACAACGCATCGGCGAAGCGGAGAAGCTCGGCTTCAAGCGGTTCATACTTCCCAAATACAA
TATGCAGGGACTGAACACTTCCAAACTGAAAATCGAACTTATACCGGTGAGAAAGGTGGAAGAGGCGTTCCGGGCATTGT
TCGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(341-427)

AAA domain (AAA_25)

(72-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A414MCC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.416

100

0.519
  radA Streptococcus mitis SK321

47.253

100

0.473
  radA Streptococcus mitis NCTC 12261

47.253

100

0.473
  radA Streptococcus pneumoniae Rx1

47.253

100

0.473
  radA Streptococcus pneumoniae D39

47.253

100

0.473
  radA Streptococcus pneumoniae R6

47.253

100

0.473
  radA Streptococcus pneumoniae TIGR4

47.253

100

0.473