Detailed information NTG0551222

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: INE90_RS07970
• Genome accession: NZ_CP072220
• Coordinates: 1914912..1916279 (-)
• Length: 455 a.a.
• NCBI ID: WP_005834974.1
• Uniprot ID: A0A078S0N1
• Organism: Bacteroides uniformis strain CL11T00C07
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1909912..1921279

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INE90_RS07965 (INE90_01613)	-	1913284..1914906 (-)	1623	WP_211475935.1	NAD(P)/FAD-dependent oxidoreductase	-
INE90_RS07970 (INE90_01614)	radA	1914912..1916279 (-)	1368	WP_005834974.1	DNA repair protein RadA	Machinery gene
INE90_RS07975 (INE90_01615)	-	1916401..1916943 (+)	543	WP_005834976.1	beta-class carbonic anhydrase	-
INE90_RS07980 (INE90_01616)	-	1916954..1917991 (-)	1038	WP_195207971.1	asparaginase	-
INE90_RS07985 (INE90_01617)	thrA	1918440..1920872 (+)	2433	WP_005828504.1	bifunctional aspartate kinase/homoserine dehydrogenase I	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 50119.04 Da
• Isoelectric Point: 7.1118

>NTDB_id=551222 INE90_RS07970 WP_005834974.1 1914912..1916279(-) (radA) [Bacteroides uniformis strain CL11T00C07]
MAKEKTVYVCSNCGQDSPKWVGKCPSCGMWNTYVEEVVRKEVVNKRPVSGIETAKAKPITLHEIVADDEPRIDLHDAELN
RVLGGGLVQGSLVLIGGEPGIGKSTLVLQTVLRIPEKRILYVSGEESTRQLKLRADRLTSASSDCLIVCETSLEQIYVHI
KNIRPDIVIIDSIQTISTETLESSPGSIAQVRECSASILRFAKETHTAVILIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGIAIASAIEGIRPFLIETQALVSSAVYGNP
QRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISSILSSNMDTAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFILPKYNMQGLNTKKIKMELIPVRKVEEAFRALFG

Nucleotide

• Length: 1368 bp

>NTDB_id=551222 INE90_RS07970 WP_005834974.1 1914912..1916279(-) (radA) [Bacteroides uniformis strain CL11T00C07]
ATGGCTAAAGAGAAGACGGTTTATGTATGCAGCAACTGCGGACAAGACTCTCCCAAATGGGTAGGCAAGTGTCCGTCGTG
CGGAATGTGGAACACGTATGTGGAAGAGGTGGTACGGAAAGAAGTGGTGAACAAGCGTCCCGTATCGGGCATAGAGACCG
CCAAAGCCAAACCCATAACCCTCCATGAAATTGTAGCCGATGACGAACCGCGCATCGACCTCCATGATGCCGAACTGAAC
CGGGTACTAGGTGGTGGTCTTGTACAAGGATCTCTTGTTTTGATTGGCGGCGAACCGGGCATCGGGAAATCCACCCTGGT
GCTACAAACCGTACTCCGCATACCGGAAAAACGCATCCTCTACGTCTCCGGCGAAGAAAGTACCCGCCAATTGAAACTGC
GTGCCGACCGCTTGACAAGTGCTTCCAGTGATTGCCTCATCGTATGCGAAACTTCCCTGGAACAGATTTACGTCCATATC
AAGAACATCCGCCCGGACATCGTCATCATCGACTCCATACAGACGATTTCTACCGAAACCCTTGAATCGTCGCCGGGGAG
TATTGCCCAGGTACGGGAATGTTCCGCCTCCATCCTGCGCTTTGCCAAGGAAACGCATACGGCGGTCATCCTTATCGGGC
ATATCAATAAGGAAGGAAGCATAGCCGGCCCCAAGGTACTGGAACATATCGTGGATACCGTACTCCAGTTCGAGGGCGAC
CAGCACTACATGTACCGCATCCTGCGTAGCATCAAGAACCGCTTCGGAAGCACTGCCGAACTGGGTATTTACGAAATGCG
GCAAGATGGATTACGGCAGGTGAGCAACCCATCCGAACTACTGCTGAGCCAGGACCATGAAGGTATGAGCGGCATAGCCA
TCGCCTCCGCGATAGAAGGCATCAGACCGTTCCTCATCGAAACGCAGGCATTGGTCAGCAGTGCCGTATATGGTAACCCA
CAACGCTCTGCCACAGGGTTCGACATCCGCCGCATGAATATGCTGCTGGCCGTATTGGAAAAACGTGTAGGCTTCAAGCT
GGCACAGAAAGACGTCTTTCTCAACATTGCCGGCGGATTGAAAGTGAACGACCCGGCAATAGACCTTGCCGTCATCAGCT
CTATCCTCTCCAGCAACATGGACACGGCCATAGAGCCGGAGGTGTGCATGGCGGGAGAAATAGGTCTGTCAGGTGAAATC
CGTCCAGTAAACCGCATAGAGCAGCGTATCGGAGAAGCAGAGAAACTCGGATTCAAGCGGTTCATACTTCCCAAGTATAA
TATGCAAGGACTGAACACGAAGAAGATTAAAATGGAATTGATACCGGTACGGAAAGTGGAAGAAGCATTCCGTGCCTTAT
TCGGATAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (72-219)

• Subunit ChlI of Mg-chelatase (ChlI) (341-427)

3D structure

• AlphaFold DB: A0A078S0N1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	50.763	100	0.512
radA	Streptococcus mitis SK321	47.912	100	0.479
radA	Streptococcus mitis NCTC 12261	47.912	100	0.479
radA	Streptococcus pneumoniae Rx1	47.912	100	0.479
radA	Streptococcus pneumoniae D39	47.912	100	0.479
radA	Streptococcus pneumoniae R6	47.912	100	0.479
radA	Streptococcus pneumoniae TIGR4	47.912	100	0.479