Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   B938_RS01760 Genome accession   NC_019842
Coordinates   331293..331730 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis AS43.3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 326293..336730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B938_RS01735 (B938_01540) - 327313..328449 (+) 1137 WP_015239125.1 zinc-dependent alcohol dehydrogenase -
  B938_RS01740 (B938_01545) - 328464..328898 (+) 435 WP_007409358.1 RDD family protein -
  B938_RS01745 (B938_01550) - 329015..329293 (+) 279 WP_263612330.1 YckD family protein -
  B938_RS01750 (B938_01555) - 329397..330833 (+) 1437 WP_015239127.1 glycoside hydrolase family 1 protein -
  B938_RS01755 (B938_01560) nin/comJ 330874..331272 (-) 399 WP_015239128.1 competence protein ComJ Regulator
  B938_RS01760 (B938_01565) nucA/comI 331293..331730 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  B938_RS01765 (B938_01570) hxlB 332088..332645 (-) 558 WP_015239129.1 6-phospho-3-hexuloisomerase -
  B938_RS01770 (B938_01575) hxlA 332642..333277 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  B938_RS01775 (B938_01580) - 333509..333870 (+) 362 Protein_309 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=55122 B938_RS01760 WP_003156588.1 331293..331730(-) (nucA/comI) [Bacillus velezensis AS43.3]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=55122 B938_RS01760 WP_003156588.1 331293..331730(-) (nucA/comI) [Bacillus velezensis AS43.3]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment