Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   B938_RS00235 Genome accession   NC_019842
Coordinates   45628..45918 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis AS43.3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40628..50918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B938_RS00195 (B938_00155) darA 40645..40974 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  B938_RS00200 (B938_00160) - 40987..41427 (+) 441 WP_004264730.1 YaaR family protein -
  B938_RS00205 (B938_00165) holB 41439..42428 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  B938_RS00210 (B938_00170) ricT 42431..43258 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  B938_RS00215 (B938_00175) yabA 43273..43632 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  B938_RS00220 (B938_00180) - 43693..44436 (+) 744 WP_015239018.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  B938_RS00225 (B938_00185) - 44423..44722 (+) 300 WP_015239019.1 GIY-YIG nuclease family protein -
  B938_RS00230 (B938_00190) rsmI 44697..45578 (+) 882 WP_041481995.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  B938_RS00235 (B938_00195) abrB 45628..45918 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  B938_RS00240 (B938_00200) metG 46403..48394 (+) 1992 WP_015239021.1 methionine--tRNA ligase -
  B938_RS00245 (B938_00205) - 48470..49237 (+) 768 WP_015239022.1 TatD family hydrolase -
  B938_RS00250 (B938_00210) - 49372..50697 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=55117 B938_RS00235 WP_169510469.1 45628..45918(-) (abrB) [Bacillus velezensis AS43.3]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=55117 B938_RS00235 WP_169510469.1 45628..45918(-) (abrB) [Bacillus velezensis AS43.3]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment