Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LUZ02_RS02890 Genome accession   NZ_CP089491
Coordinates   613833..614819 (-) Length   328 a.a.
NCBI ID   WP_001067051.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0242_IV_ST30     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 608833..619819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ02_RS02865 trpS 609011..610000 (+) 990 WP_000448941.1 tryptophan--tRNA ligase -
  LUZ02_RS02870 - 610026..610535 (-) 510 Protein_569 transposase -
  LUZ02_RS02875 opp4C 611002..611883 (-) 882 WP_001180267.1 oligopeptide ABC transporter permease -
  LUZ02_RS02880 opp4B 611895..612857 (-) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  LUZ02_RS02885 - 612850..613830 (-) 981 WP_000427769.1 ABC transporter ATP-binding protein -
  LUZ02_RS02890 amiE 613833..614819 (-) 987 WP_001067051.1 ABC transporter ATP-binding protein Regulator
  LUZ02_RS02895 opp4A 614870..616585 (-) 1716 WP_000517164.1 oligopeptide ABC transporter substrate-binding protein -
  LUZ02_RS02900 - 616796..618451 (-) 1656 WP_000197013.1 peptide ABC transporter substrate-binding protein -
  LUZ02_RS02905 - 618469..619410 (-) 942 WP_001670300.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 36980.42 Da        Isoelectric Point: 8.1005

>NTDB_id=551025 LUZ02_RS02890 WP_001067051.1 613833..614819(-) (amiE) [Staphylococcus aureus strain 0242_IV_ST30]
MNNVLLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLSSGEVIFDGKRIDT
LNEKQLLDIRGNDIAMIFQEPMTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIARQDEILNSYPHQLSGG
MRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGG
IKEILHNPKHPYTQKLLSTIPKLKEEQKRLETIEGIVPSIQAFHVNKCRFANRCNKKMDICNNQSPKMHVCEDVIVRCHL
YKNEYKEI

Nucleotide


Download         Length: 987 bp        

>NTDB_id=551025 LUZ02_RS02890 WP_001067051.1 613833..614819(-) (amiE) [Staphylococcus aureus strain 0242_IV_ST30]
ATGAATAATGTATTGTTAGAGGTTAAAGATTTAGAAACATCATTAAAAATAAATAATGAATGGTTAGCAACTGTTGAAAA
TATTTCTTTTGAATTATCTAAAGGAGAAGTTTTGGGTATAGTAGGGGAATCTGGTTGCGGTAAGTCCATATTAAGTAAGT
CAATTATTAAATTATTACCAGAAAAGATATCTAAACTAAGTAGTGGAGAAGTTATATTTGATGGTAAACGAATCGATACG
CTCAATGAGAAGCAATTGCTAGATATTCGAGGAAATGATATTGCTATGATTTTTCAAGAACCTATGACTGCTTTAAATCC
TGTATTTACCATAAAAAATCAACTTGTGGAATCTATAAAATCACATAAAAAAATTTCTAAAAAAGAAGCAAATAACTTAG
CAAAAGATTTACTAAAAAAAGTTGGAATTGCTAGACAAGATGAAATATTAAATAGCTATCCTCATCAATTATCTGGTGGT
ATGAGACAAAGAGTAATGATTGCAATGGCCATTTCATGTTCTCCTAAATTATTAATTGCTGATGAACCTACAACAGCATT
GGATGTCACGATTCAAGCGCAAATATTAGACTTATTAAAAGAATTGCAAAAGGAAACGCAAATGGCAATTATGATGATTA
CACATGATTTGAGTGTAGTTGCTGAGTTTTGCGATAAAGTCTTAGTTATGTATGCAGGTCAAATTGTAGAATTTGGAGGC
ATAAAAGAAATACTACACAATCCGAAACATCCTTATACCCAAAAATTATTATCAACAATTCCAAAACTTAAAGAAGAGCA
GAAACGACTTGAAACGATAGAAGGAATTGTGCCATCAATCCAAGCATTTCACGTTAATAAGTGCAGATTTGCAAATAGAT
GTAACAAAAAAATGGATATTTGTAATAATCAATCTCCTAAAATGCATGTTTGTGAAGACGTCATTGTACGTTGTCATTTG
TACAAAAATGAATATAAGGAGATATAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(236-301)

ABC transporter (ABC_tran)

(26-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

44.872

95.122

0.427
  amiE Streptococcus thermophilus LMG 18311

44.231

95.122

0.421
  amiE Streptococcus thermophilus LMD-9

44.231

95.122

0.421
  oppD Streptococcus mutans UA159

44.66

94.207

0.421