Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   J3E66_RS08280 Genome accession   NZ_CP072178
Coordinates   1657251..1659062 (+) Length   603 a.a.
NCBI ID   WP_003656146.1    Uniprot ID   -
Organism   Lactobacillus gasseri strain HL20     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1652251..1664062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3E66_RS08255 (J3E66_001651) - 1652612..1653394 (-) 783 WP_003656143.1 threonine/serine exporter family protein -
  J3E66_RS08260 (J3E66_001652) - 1653417..1654964 (-) 1548 WP_003656144.1 ABC-F family ATP-binding cassette domain-containing protein -
  J3E66_RS08265 (J3E66_001653) - 1654991..1655365 (-) 375 WP_003646731.1 hypothetical protein -
  J3E66_RS08270 (J3E66_001654) - 1655589..1655858 (+) 270 WP_003646730.1 hypothetical protein -
  J3E66_RS08275 (J3E66_001655) - 1655963..1657087 (-) 1125 WP_003656145.1 LCP family protein -
  J3E66_RS08280 (J3E66_001656) pepF 1657251..1659062 (+) 1812 WP_003656146.1 oligoendopeptidase F Regulator
  J3E66_RS08285 (J3E66_001657) - 1659126..1659505 (-) 380 Protein_1573 hypothetical protein -
  J3E66_RS08290 (J3E66_001658) - 1659723..1661234 (-) 1512 WP_035425129.1 L-lactate permease -
  J3E66_RS08295 (J3E66_001659) - 1661354..1662145 (-) 792 WP_003646724.1 metal ABC transporter permease -
  J3E66_RS08300 (J3E66_001660) - 1662145..1662804 (-) 660 WP_003646723.1 metal ABC transporter ATP-binding protein -
  J3E66_RS08305 (J3E66_001661) - 1662839..1663738 (-) 900 WP_003656149.1 metal ABC transporter solute-binding protein, Zn/Mn family -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68999.14 Da        Isoelectric Point: 4.9490

>NTDB_id=550930 J3E66_RS08280 WP_003656146.1 1657251..1659062(+) (pepF) [Lactobacillus gasseri strain HL20]
MALPTRNEVSDELKWDLSRVFKNDQEWEQEYKQVAQEIKNLSKFKGTLAKSGKELYEGITEILAVNRRLEKVYVYATMSS
DVDTSNTHYLGFVAKAQSLANQMSAAIAFVDPEILSIPAKKLTKFMQDEPRLENYRHRLEQITQKRPHTLPANEEKIIAD
AGDAMGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRKVRKNAFDVMYASYGQFENSLASTLSGEVKA
HNFNARVHKYNSAREAALSENSVPTAVYDTLIKEVNSHLDLLHRYVSLRKKILGLKDLQMYDMYVPLTGKPVLSYNFNEA
KEEARKALAPLGEDYLKHVDYIFNNRVIDVVESQNKVTGAYSGGAYNTDPYELLNWEDNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFILNHYLDSFKGTLFRQTQFAEFEQFIHEADANGQPLTA
DVLDEFYGNLNQRYYGNSVEPGGEIAKEWARIPHFYYNFYVYQYATGFAAATALANKVVHGTDKEREAYINFLKAGSSDY
PTEIMKHAGVDMTKADYLRDAFDTFEKRLNEFEKIVDELNAEK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=550930 J3E66_RS08280 WP_003656146.1 1657251..1659062(+) (pepF) [Lactobacillus gasseri strain HL20]
ATGGCTCTTCCAACAAGAAATGAAGTATCTGATGAGCTTAAGTGGGACTTAAGTCGTGTTTTTAAAAACGATCAAGAATG
GGAACAAGAATATAAGCAGGTTGCGCAAGAAATCAAGAACTTAAGCAAATTCAAGGGAACACTTGCCAAATCTGGTAAAG
AGCTCTACGAAGGAATTACAGAAATTTTAGCTGTAAATCGACGCTTAGAAAAAGTATATGTTTATGCCACGATGTCAAGC
GACGTTGACACGAGCAATACTCATTACCTTGGCTTTGTTGCCAAAGCTCAAAGCTTAGCTAATCAAATGAGTGCTGCGAT
CGCTTTTGTCGATCCAGAAATCTTGTCTATTCCAGCAAAAAAACTTACTAAGTTTATGCAAGATGAACCACGTTTAGAAA
ATTACCGGCATCGCCTTGAACAAATTACCCAAAAGCGTCCGCATACTCTACCAGCAAATGAAGAAAAAATCATTGCTGAC
GCTGGAGACGCAATGGGAACGTCTGCTAACACTTTTAATGTCTTAACCAATTCTGATATGGAATATGGCTACGTCCAAGA
TGAAGACGGTGAAATGGTTCAATTATCTGACGGCTTATATTCGCTTTTAATTCAATCTCAAGACCGCAAGGTTCGCAAAA
ACGCCTTTGACGTAATGTACGCAAGCTACGGTCAGTTTGAAAATAGTCTTGCTTCAACTTTATCAGGCGAAGTAAAGGCT
CACAATTTTAATGCTCGAGTACATAAATATAATTCAGCTAGAGAAGCTGCTTTAAGTGAAAATAGTGTTCCAACAGCTGT
TTACGATACCTTAATCAAGGAAGTAAATAGCCACCTCGACTTACTTCACCGCTACGTTTCATTAAGAAAGAAAATTTTAG
GCTTAAAAGACCTTCAAATGTACGATATGTACGTGCCATTAACTGGGAAGCCCGTTCTTTCTTATAACTTTAACGAAGCA
AAAGAAGAAGCTAGAAAGGCTTTAGCACCATTAGGAGAGGACTATTTAAAGCACGTTGATTACATTTTTAATAACCGTGT
AATTGACGTAGTTGAAAGTCAAAATAAAGTAACTGGTGCATATTCAGGTGGGGCTTACAATACTGATCCATACGAACTAC
TTAACTGGGAAGATAACCTTGATTCACTCTATACTCTAGTTCATGAGACTGGTCACTCTGTCCACTCTTGGTACACAAGA
AATACTCAGCCTTACGTCTATGGTGATTATCCAATTTTCGTTGCTGAAATTGCTTCAACTACCAACGAAAATATTTTAAC
CGAGTATTTCTTAGATAAAATTACTGATCCAAAGACCCGTGCATTTATCTTAAACCATTATCTTGACTCCTTTAAAGGCA
CACTTTTCCGTCAAACTCAATTTGCGGAATTTGAGCAGTTTATTCATGAAGCTGATGCTAATGGTCAACCGTTAACAGCC
GATGTCCTTGATGAATTTTATGGTAATTTGAATCAAAGATATTATGGTAATAGCGTTGAGCCAGGCGGAGAGATTGCTAA
AGAATGGGCGCGTATTCCCCACTTCTACTACAACTTCTACGTTTACCAATACGCAACAGGTTTTGCGGCTGCAACTGCTC
TTGCCAATAAAGTTGTTCACGGCACTGACAAAGAACGTGAGGCTTATATTAATTTCTTAAAGGCTGGCTCTTCCGATTAC
CCAACAGAAATTATGAAACATGCTGGCGTTGATATGACTAAGGCTGATTACTTGAGGGATGCTTTTGATACTTTTGAAAA
GCGTCTTAATGAATTTGAAAAAATTGTTGATGAATTAAACGCTGAAAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.357

98.507

0.516