Detailed information
Bioinformatically predicted
Overview
| Name | ddrB | Type | Machinery gene |
| Locus tag | DEIPE_RS11415 | Genome accession | NC_019793 |
| Coordinates | 2334902..2335384 (+) | Length | 160 a.a. |
| NCBI ID | WP_015236121.1 | Uniprot ID | L0A2Z8 |
| Organism | Deinococcus peraridilitoris DSM 19664 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2329902..2340384
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DEIPE_RS11390 (Deipe_2336) | queF | 2331762..2332244 (+) | 483 | WP_015236116.1 | preQ(1) synthase | - |
| DEIPE_RS11395 (Deipe_2337) | - | 2332254..2332664 (+) | 411 | WP_015236117.1 | 6-carboxytetrahydropterin synthase | - |
| DEIPE_RS11400 (Deipe_2338) | - | 2332705..2333397 (+) | 693 | WP_015236118.1 | 7-carboxy-7-deazaguanine synthase QueE | - |
| DEIPE_RS11405 (Deipe_2339) | queC | 2333397..2334104 (+) | 708 | WP_041230858.1 | 7-cyano-7-deazaguanine synthase QueC | - |
| DEIPE_RS11410 (Deipe_2340) | - | 2334254..2334721 (+) | 468 | WP_015236120.1 | hypothetical protein | - |
| DEIPE_RS11415 (Deipe_2341) | ddrB | 2334902..2335384 (+) | 483 | WP_015236121.1 | single-stranded DNA-binding protein | Machinery gene |
| DEIPE_RS11420 (Deipe_2342) | - | 2335410..2336186 (-) | 777 | WP_015236122.1 | serine/threonine-protein kinase | - |
| DEIPE_RS11425 (Deipe_2343) | lepB | 2336412..2337176 (+) | 765 | WP_015236123.1 | signal peptidase I | - |
| DEIPE_RS11430 (Deipe_2344) | - | 2337246..2337542 (-) | 297 | WP_015236124.1 | DUF503 family protein | - |
| DEIPE_RS11435 (Deipe_2345) | - | 2337795..2337968 (-) | 174 | WP_052326786.1 | hypothetical protein | - |
| DEIPE_RS11440 (Deipe_2346) | - | 2338023..2338517 (-) | 495 | WP_015236126.1 | DUF1999 domain-containing protein | - |
| DEIPE_RS11445 (Deipe_2347) | - | 2338701..2339105 (+) | 405 | WP_015236127.1 | hypothetical protein | - |
| DEIPE_RS11450 (Deipe_2348) | pth | 2339116..2339760 (+) | 645 | WP_015236128.1 | aminoacyl-tRNA hydrolase | - |
Sequence
Protein
Download Length: 160 a.a. Molecular weight: 17949.21 Da Isoelectric Point: 8.0043
>NTDB_id=55093 DEIPE_RS11415 WP_015236121.1 2334902..2335384(+) (ddrB) [Deinococcus peraridilitoris DSM 19664]
MLHIEFTTDLGAKVTVDVEGPETLLDVQRRYGKQGWYSGDVPAGGFQFPLDNEADFDWSLLGGRKFVLEDGEEAVYCRGS
VWKRRELAAVDTRKLRLPAAVKYSRGARPTDPEHLREKSDGDIEYVTLAIFRSGRRNPNYALPGEASLPVRGAGQPVRRR
MLHIEFTTDLGAKVTVDVEGPETLLDVQRRYGKQGWYSGDVPAGGFQFPLDNEADFDWSLLGGRKFVLEDGEEAVYCRGS
VWKRRELAAVDTRKLRLPAAVKYSRGARPTDPEHLREKSDGDIEYVTLAIFRSGRRNPNYALPGEASLPVRGAGQPVRRR
Nucleotide
Download Length: 483 bp
>NTDB_id=55093 DEIPE_RS11415 WP_015236121.1 2334902..2335384(+) (ddrB) [Deinococcus peraridilitoris DSM 19664]
ATGTTACACATTGAATTCACCACGGACCTCGGGGCCAAGGTCACCGTCGATGTTGAAGGCCCCGAAACGCTTTTGGACGT
TCAGCGGCGCTATGGAAAACAGGGCTGGTACTCCGGTGACGTTCCCGCCGGTGGATTTCAGTTCCCGCTCGACAATGAGG
CCGATTTCGACTGGTCGCTTCTCGGTGGACGGAAATTTGTGCTGGAAGACGGAGAAGAAGCAGTGTATTGCCGTGGTTCG
GTCTGGAAGCGGCGGGAGCTGGCGGCAGTCGACACCCGAAAGCTGCGCCTGCCCGCTGCCGTGAAGTACTCACGCGGCGC
GCGTCCCACCGATCCCGAGCACCTGCGCGAAAAAAGTGACGGCGACATCGAATACGTCACGCTGGCGATCTTCCGCAGCG
GACGCCGCAATCCCAATTACGCCCTGCCCGGTGAAGCGAGCCTGCCGGTGCGTGGGGCCGGGCAGCCGGTCCGGCGCCGC
TGA
ATGTTACACATTGAATTCACCACGGACCTCGGGGCCAAGGTCACCGTCGATGTTGAAGGCCCCGAAACGCTTTTGGACGT
TCAGCGGCGCTATGGAAAACAGGGCTGGTACTCCGGTGACGTTCCCGCCGGTGGATTTCAGTTCCCGCTCGACAATGAGG
CCGATTTCGACTGGTCGCTTCTCGGTGGACGGAAATTTGTGCTGGAAGACGGAGAAGAAGCAGTGTATTGCCGTGGTTCG
GTCTGGAAGCGGCGGGAGCTGGCGGCAGTCGACACCCGAAAGCTGCGCCTGCCCGCTGCCGTGAAGTACTCACGCGGCGC
GCGTCCCACCGATCCCGAGCACCTGCGCGAAAAAAGTGACGGCGACATCGAATACGTCACGCTGGCGATCTTCCGCAGCG
GACGCCGCAATCCCAATTACGCCCTGCCCGGTGAAGCGAGCCTGCCGGTGCGTGGGGCCGGGCAGCCGGTCCGGCGCCGC
TGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ddrB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
61.585 |
100 |
0.631 |