Detailed information NTG0055082

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DEIPE_RS03085
• Genome accession: NC_019793
• Coordinates: 639470..640615 (+)
• Length: 381 a.a.
• NCBI ID: WP_041231122.1
• Uniprot ID: -
• Organism: Deinococcus peraridilitoris DSM 19664
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 634470..645615

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DEIPE_RS03060 (Deipe_0627)	-	635653..636324 (+)	672	WP_015234526.1	PIG-L family deacetylase	-
DEIPE_RS03065 (Deipe_0628)	-	636368..637330 (+)	963	WP_015234527.1	ABC transporter ATP-binding protein	-
DEIPE_RS03070 (Deipe_0629)	-	637346..638125 (+)	780	WP_015234528.1	ABC transporter permease	-
DEIPE_RS03075 (Deipe_0630)	-	638122..638463 (+)	342	WP_015234529.1	YraN family protein	-
DEIPE_RS03080 (Deipe_0631)	-	638547..639281 (+)	735	WP_015234530.1	GDSL-type esterase/lipase family protein	-
DEIPE_RS03085 (Deipe_0632)	pilD	639470..640615 (+)	1146	WP_041231122.1	prepilin peptidase	Machinery gene
DEIPE_RS03090 (Deipe_0633)	-	640674..641669 (-)	996	WP_015234532.1	malate dehydrogenase	-
DEIPE_RS03095 (Deipe_0634)	rplS	641820..642266 (-)	447	WP_015234533.1	50S ribosomal protein L19	-
DEIPE_RS03100 (Deipe_0635)	-	642604..643578 (+)	975	WP_015234534.1	peptidoglycan-binding protein	-
DEIPE_RS03105 (Deipe_0636)	-	643635..644717 (+)	1083	WP_015234535.1	N-acetylmuramoyl-L-alanine amidase	-
DEIPE_RS03110 (Deipe_0637)	-	644710..645219 (-)	510	WP_015234536.1	NUDIX domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 40192.83 Da
• Isoelectric Point: 7.2639

>NTDB_id=55082 DEIPE_RS03085 WP_041231122.1 639470..640615(+) (pilD) [Deinococcus peraridilitoris DSM 19664]
MSTDTLIVVLGALLGALIGSFSNVLIHRLPRRESVAFPPSHCPNCQHRLSALDLIPLFSWAGLRGRCRYCGARISARYPL
VELLTALGYALLAVLLPWSAAGASLLGLWAMFTLLLVISFIDAETRTIPDALVLPGLALGLLLGFANERTGALIAGLPGV
QGALAGALLGAGLIALIALYGELVLRRFRERRFPEFPVSYQQVALAALVGAWLGVVWGVVLGLFSVALNVFARRVVRLPE
ILLLLGLLVSIVLGVSGTGPGVIDMTQNALAAAGGMSLLAALYWWTQPDEIESEDQDYDPVAMGFGDVKLMGLLGAFMGV
TGALVSLGVAILVGALVGVVTLSLRRENKLPFAPLLALGALVHLLYGAQIVQAFQALYALD

Nucleotide

• Length: 1146 bp

>NTDB_id=55082 DEIPE_RS03085 WP_041231122.1 639470..640615(+) (pilD) [Deinococcus peraridilitoris DSM 19664]
ATGAGTACCGACACCCTGATCGTGGTCCTGGGTGCATTGCTTGGCGCCTTGATCGGCTCATTCTCCAACGTGCTGATCCA
CCGCCTGCCGCGCCGCGAATCGGTGGCATTTCCGCCGTCGCACTGCCCGAACTGCCAGCACCGCCTGAGTGCCCTCGATT
TGATTCCATTGTTTTCGTGGGCGGGCCTGCGCGGACGTTGCCGGTACTGTGGCGCGCGCATCTCGGCGCGCTACCCGCTG
GTCGAGTTGCTCACGGCGCTGGGATACGCACTGCTGGCCGTACTGCTGCCCTGGTCGGCGGCGGGGGCGAGCCTGCTCGG
TTTGTGGGCGATGTTCACACTGCTGCTGGTGATCAGCTTCATCGATGCCGAGACCCGCACCATTCCCGACGCGCTGGTAT
TGCCCGGACTGGCGCTGGGGCTGCTGCTGGGCTTTGCCAACGAGCGAACCGGAGCGCTGATCGCCGGGCTGCCCGGCGTG
CAGGGCGCGCTCGCGGGCGCGCTGCTGGGGGCCGGGCTGATCGCCCTGATCGCCCTGTACGGTGAACTGGTGCTGCGCCG
TTTTCGCGAGCGGCGTTTTCCGGAGTTTCCGGTCAGTTACCAGCAGGTAGCGCTCGCGGCGCTGGTGGGCGCCTGGCTGG
GCGTGGTGTGGGGCGTGGTACTGGGACTCTTCTCGGTGGCCCTGAACGTCTTTGCGCGCCGGGTGGTGCGCCTGCCGGAA
ATCCTGCTGCTGCTGGGATTGCTGGTCTCGATTGTGCTGGGCGTGTCAGGCACCGGGCCCGGAGTGATCGACATGACCCA
GAACGCCCTGGCCGCGGCGGGCGGCATGAGCCTGCTCGCCGCGCTGTACTGGTGGACGCAACCCGACGAGATCGAAAGCG
AAGATCAGGATTACGATCCGGTGGCGATGGGCTTTGGTGACGTGAAGCTGATGGGCCTGCTGGGCGCCTTCATGGGCGTG
ACAGGAGCACTGGTATCGCTGGGCGTGGCCATTCTGGTGGGCGCCCTGGTGGGCGTCGTGACCCTCAGCCTGCGCCGCGA
GAACAAGCTGCCCTTCGCGCCGCTGCTGGCGTTGGGTGCGCTGGTGCACCTGTTGTACGGCGCGCAGATCGTTCAGGCTT
TTCAGGCGCTCTACGCCCTGGACTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (234-339)

• Type IV leader peptidase family (Peptidase_A24) (110-227)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-94)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	52.455	100	0.533