Detailed information
Bioinformatically predicted
Overview
| Name | pilM | Type | Machinery gene |
| Locus tag | DACSA_RS15550 | Genome accession | NC_019780 |
| Coordinates | 3250860..3251975 (-) | Length | 371 a.a. |
| NCBI ID | WP_015230663.1 | Uniprot ID | K9YXN5 |
| Organism | Dactylococcopsis salina PCC 8305 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3245860..3256975
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DACSA_RS19370 (Dacsa_3157) | - | 3246206..3246676 (+) | 471 | Protein_3231 | RNA-guided endonuclease TnpB family protein | - |
| DACSA_RS15535 (Dacsa_3158) | - | 3247049..3249199 (-) | 2151 | WP_015230660.1 | type IV pilus secretin family protein | - |
| DACSA_RS15540 (Dacsa_3159) | - | 3249263..3250024 (-) | 762 | WP_015230661.1 | hypothetical protein | - |
| DACSA_RS15545 (Dacsa_3160) | - | 3250077..3250853 (-) | 777 | WP_015230662.1 | PilN domain-containing protein | - |
| DACSA_RS15550 (Dacsa_3161) | pilM | 3250860..3251975 (-) | 1116 | WP_015230663.1 | type IV pilus assembly protein PilM | Machinery gene |
| DACSA_RS15555 (Dacsa_3162) | - | 3252282..3252620 (+) | 339 | WP_015230664.1 | P-II family nitrogen regulator | - |
| DACSA_RS15565 (Dacsa_3163) | - | 3252994..3253773 (-) | 780 | WP_408605634.1 | reverse transcriptase domain-containing protein | - |
| DACSA_RS15570 (Dacsa_3164) | rdgB | 3254580..3255161 (-) | 582 | WP_015230665.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| DACSA_RS19375 (Dacsa_3165) | - | 3255260..3255481 (+) | 222 | WP_015230666.1 | hypothetical protein | - |
| DACSA_RS15575 (Dacsa_3166) | - | 3255514..3255996 (+) | 483 | WP_015230667.1 | Tic20 family protein | - |
| DACSA_RS15580 (Dacsa_3167) | - | 3256004..3256795 (-) | 792 | WP_015230668.1 | fumarylacetoacetate hydrolase family protein | - |
Sequence
Protein
Download Length: 371 a.a. Molecular weight: 41427.60 Da Isoelectric Point: 4.2184
>NTDB_id=55075 DACSA_RS15550 WP_015230663.1 3250860..3251975(-) (pilM) [Dactylococcopsis salina PCC 8305]
MLQPLSKYIPSFLQKKGKGVAIELTPNQINVSQVQNTDRGYKLQFLATKEVPEGVYSDGKIIDPPTLADLIKETLEENKI
KAKTVNTAVPMRDSILSIIPVPAELSEEELRDVVLNQEAGLYLPYPIEEMDLDYQKLGYFADEDGIEKVQVLLISTRKEV
TDVYLDIFEEQVGLKINALEVNTLALIRTIREQLRQYPSQEAVVLVDIEFDNTELVIIVDGVPEFKRTVPIGTFQLQSAL
SRAMNLPPSRQVSMLQEMTLPISSEKTKEETTPLNLGMNALQRVLGELTDEVRRSVDYYLSQSEGMEVVQMLLAGPGAGI
GEIDSFFNQRLNIPTTRIDPVDALSLETDEEIVIPQRPGLGTILGLALKEI
MLQPLSKYIPSFLQKKGKGVAIELTPNQINVSQVQNTDRGYKLQFLATKEVPEGVYSDGKIIDPPTLADLIKETLEENKI
KAKTVNTAVPMRDSILSIIPVPAELSEEELRDVVLNQEAGLYLPYPIEEMDLDYQKLGYFADEDGIEKVQVLLISTRKEV
TDVYLDIFEEQVGLKINALEVNTLALIRTIREQLRQYPSQEAVVLVDIEFDNTELVIIVDGVPEFKRTVPIGTFQLQSAL
SRAMNLPPSRQVSMLQEMTLPISSEKTKEETTPLNLGMNALQRVLGELTDEVRRSVDYYLSQSEGMEVVQMLLAGPGAGI
GEIDSFFNQRLNIPTTRIDPVDALSLETDEEIVIPQRPGLGTILGLALKEI
Nucleotide
Download Length: 1116 bp
>NTDB_id=55075 DACSA_RS15550 WP_015230663.1 3250860..3251975(-) (pilM) [Dactylococcopsis salina PCC 8305]
ATGCTACAACCACTCTCAAAGTATATTCCTAGCTTTTTACAGAAGAAAGGAAAGGGGGTGGCGATCGAGCTAACTCCTAA
CCAGATTAATGTCTCTCAAGTCCAAAATACAGACCGAGGCTATAAACTGCAATTTTTAGCAACCAAAGAAGTTCCCGAAG
GCGTTTATTCCGATGGCAAAATCATTGATCCTCCCACCCTAGCAGATTTAATCAAAGAGACACTGGAAGAAAATAAAATC
AAAGCAAAAACCGTTAATACCGCCGTCCCGATGCGAGATTCCATTCTAAGCATTATACCAGTTCCCGCCGAACTGTCAGA
AGAAGAACTAAGGGATGTTGTCCTTAACCAAGAAGCGGGGCTTTACCTTCCTTATCCCATTGAAGAAATGGATTTAGACT
ATCAAAAACTCGGTTATTTTGCTGACGAAGATGGCATCGAAAAAGTGCAAGTCTTATTAATATCAACTCGGAAAGAAGTC
ACCGATGTTTATCTTGATATTTTTGAAGAGCAAGTGGGCTTAAAAATCAATGCCCTTGAAGTTAACACCTTAGCATTAAT
TCGCACGATTAGGGAACAATTAAGACAATATCCTTCCCAAGAAGCAGTGGTGTTAGTCGATATTGAATTTGATAACACAG
AATTAGTGATTATCGTGGATGGTGTTCCCGAATTTAAACGCACTGTTCCCATTGGTACATTTCAATTGCAAAGCGCTTTA
AGTCGTGCCATGAATCTTCCACCGTCTCGCCAAGTATCAATGTTACAGGAAATGACCCTTCCCATTTCTTCAGAGAAAAC
GAAAGAGGAAACCACGCCTCTTAATCTTGGCATGAATGCACTACAAAGAGTTTTAGGAGAATTAACGGACGAGGTGCGTC
GATCGGTGGATTATTATTTAAGCCAAAGTGAGGGGATGGAAGTGGTACAAATGCTTTTAGCCGGACCCGGCGCTGGCATT
GGAGAAATTGATAGTTTCTTTAATCAACGTTTGAATATTCCCACGACTCGCATTGATCCGGTTGATGCTCTTTCTCTAGA
AACAGATGAGGAGATTGTCATTCCTCAGCGTCCGGGTTTAGGAACAATTTTAGGTTTAGCACTGAAGGAAATTTAA
ATGCTACAACCACTCTCAAAGTATATTCCTAGCTTTTTACAGAAGAAAGGAAAGGGGGTGGCGATCGAGCTAACTCCTAA
CCAGATTAATGTCTCTCAAGTCCAAAATACAGACCGAGGCTATAAACTGCAATTTTTAGCAACCAAAGAAGTTCCCGAAG
GCGTTTATTCCGATGGCAAAATCATTGATCCTCCCACCCTAGCAGATTTAATCAAAGAGACACTGGAAGAAAATAAAATC
AAAGCAAAAACCGTTAATACCGCCGTCCCGATGCGAGATTCCATTCTAAGCATTATACCAGTTCCCGCCGAACTGTCAGA
AGAAGAACTAAGGGATGTTGTCCTTAACCAAGAAGCGGGGCTTTACCTTCCTTATCCCATTGAAGAAATGGATTTAGACT
ATCAAAAACTCGGTTATTTTGCTGACGAAGATGGCATCGAAAAAGTGCAAGTCTTATTAATATCAACTCGGAAAGAAGTC
ACCGATGTTTATCTTGATATTTTTGAAGAGCAAGTGGGCTTAAAAATCAATGCCCTTGAAGTTAACACCTTAGCATTAAT
TCGCACGATTAGGGAACAATTAAGACAATATCCTTCCCAAGAAGCAGTGGTGTTAGTCGATATTGAATTTGATAACACAG
AATTAGTGATTATCGTGGATGGTGTTCCCGAATTTAAACGCACTGTTCCCATTGGTACATTTCAATTGCAAAGCGCTTTA
AGTCGTGCCATGAATCTTCCACCGTCTCGCCAAGTATCAATGTTACAGGAAATGACCCTTCCCATTTCTTCAGAGAAAAC
GAAAGAGGAAACCACGCCTCTTAATCTTGGCATGAATGCACTACAAAGAGTTTTAGGAGAATTAACGGACGAGGTGCGTC
GATCGGTGGATTATTATTTAAGCCAAAGTGAGGGGATGGAAGTGGTACAAATGCTTTTAGCCGGACCCGGCGCTGGCATT
GGAGAAATTGATAGTTTCTTTAATCAACGTTTGAATATTCCCACGACTCGCATTGATCCGGTTGATGCTCTTTCTCTAGA
AACAGATGAGGAGATTGTCATTCCTCAGCGTCCGGGTTTAGGAACAATTTTAGGTTTAGCACTGAAGGAAATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilM | Synechocystis sp. PCC 6803 |
59.557 |
97.305 |
0.58 |