Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   J5X95_RS17885 Genome accession   NZ_CP072120
Coordinates   3602737..3603171 (+) Length   144 a.a.
NCBI ID   WP_015417516.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3597737..3608171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS17880 (J5X95_17880) - 3601237..3602448 (-) 1212 WP_094031922.1 cytochrome P450 family protein -
  J5X95_RS17885 (J5X95_17885) nucA/comI 3602737..3603171 (+) 435 WP_015417516.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  J5X95_RS17890 (J5X95_17890) - 3603231..3603986 (+) 756 WP_094031726.1 YoaK family protein -
  J5X95_RS17895 (J5X95_17895) - 3604020..3604382 (-) 363 WP_007410383.1 hypothetical protein -
  J5X95_RS17900 (J5X95_17900) - 3604576..3605904 (-) 1329 WP_015239896.1 S8 family peptidase -
  J5X95_RS17905 (J5X95_17905) - 3606083..3606316 (+) 234 WP_015239897.1 hypothetical protein -
  J5X95_RS17910 (J5X95_17910) - 3606572..3607279 (+) 708 WP_007410381.1 poly-gamma-glutamate hydrolase family protein -
  J5X95_RS17915 (J5X95_17915) - 3607339..3607791 (+) 453 WP_039251441.1 OsmC family protein -
  J5X95_RS17920 (J5X95_17920) - 3607805..3608158 (-) 354 WP_094031727.1 DMT family transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15514.44 Da        Isoelectric Point: 7.2418

>NTDB_id=550749 J5X95_RS17885 WP_015417516.1 3602737..3603171(+) (nucA/comI) [Bacillus amyloliquefaciens strain GKT04]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADVRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=550749 J5X95_RS17885 WP_015417516.1 3602737..3603171(+) (nucA/comI) [Bacillus amyloliquefaciens strain GKT04]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGTATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCAGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATGTCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.258

86.111

0.493