Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   J5X95_RS17745 Genome accession   NZ_CP072120
Coordinates   3511459..3512709 (+) Length   416 a.a.
NCBI ID   WP_033574781.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3506459..3517709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS17715 (J5X95_17715) yfmH 3506543..3507829 (+) 1287 WP_094031713.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  J5X95_RS17720 (J5X95_17720) ymfI 3507889..3508617 (+) 729 WP_094031714.1 elongation factor P 5-aminopentanone reductase -
  J5X95_RS17725 (J5X95_17725) - 3508693..3508950 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  J5X95_RS17730 (J5X95_17730) - 3509078..3509869 (+) 792 WP_007409819.1 DUF3388 domain-containing protein -
  J5X95_RS17735 (J5X95_17735) - 3509888..3510787 (+) 900 WP_014417801.1 helix-turn-helix domain-containing protein -
  J5X95_RS17740 (J5X95_17740) pgsA 3510860..3511441 (+) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J5X95_RS17745 (J5X95_17745) cinA 3511459..3512709 (+) 1251 WP_033574781.1 competence/damage-inducible protein A Machinery gene
  J5X95_RS17750 (J5X95_17750) recA 3512880..3513923 (+) 1044 WP_003154145.1 recombinase RecA Machinery gene
  J5X95_RS17755 (J5X95_17755) - 3514091..3515272 (+) 1182 WP_007409824.1 serine hydrolase domain-containing protein -
  J5X95_RS17760 (J5X95_17760) rny 3515565..3517124 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44998.26 Da        Isoelectric Point: 5.1492

>NTDB_id=550747 J5X95_RS17745 WP_033574781.1 3511459..3512709(+) (cinA) [Bacillus amyloliquefaciens strain GKT04]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNGITVSSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=550747 J5X95_RS17745 WP_033574781.1 3511459..3512709(+) (cinA) [Bacillus amyloliquefaciens strain GKT04]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCAGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTATCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGACCGACCAAGGACGATTTG
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCATTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCGCAGACGAACCCGACGATTG
CGCCGCTCGCTGCTGACGGAGAGGTCACGCTGCGTTTAACGGCGAAACATGCCGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCTCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACGGAATTACGGTTTCCTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGCTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTTGCGGGTCCCGACCCGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATTTCAGCGGAAGGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGGATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTAAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-413)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.144

100

0.901
  cinA Streptococcus mitis NCTC 12261

47.608

100

0.478
  cinA Streptococcus mitis SK321

47.129

100

0.474
  cinA Streptococcus pneumoniae TIGR4

46.651

100

0.469
  cinA Streptococcus pneumoniae Rx1

46.651

100

0.469
  cinA Streptococcus pneumoniae R6

46.651

100

0.469
  cinA Streptococcus pneumoniae D39

46.411

100

0.466
  cinA Streptococcus mutans UA159

46.247

99.279

0.459
  cinA Streptococcus suis isolate S10

40.665

93.99

0.382