Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J5X95_RS17330 Genome accession   NZ_CP072120
Coordinates   3427507..3428406 (+) Length   299 a.a.
NCBI ID   WP_094031704.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3422507..3433406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS17310 (J5X95_17310) - 3423197..3424900 (+) 1704 WP_052827416.1 hypothetical protein -
  J5X95_RS17315 (J5X95_17315) - 3424897..3425178 (+) 282 WP_015239847.1 FlhB-like flagellar biosynthesis protein -
  J5X95_RS17320 (J5X95_17320) sucC 3425353..3426510 (+) 1158 WP_094031703.1 ADP-forming succinate--CoA ligase subunit beta -
  J5X95_RS17325 (J5X95_17325) sucD 3426539..3427441 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  J5X95_RS17330 (J5X95_17330) dprA 3427507..3428406 (+) 900 WP_094031704.1 DNA-processing protein DprA Machinery gene
  J5X95_RS17335 (J5X95_17335) topA 3428588..3430663 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  J5X95_RS17340 (J5X95_17340) trmFO 3430728..3432035 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  J5X95_RS17345 (J5X95_17345) xerC 3432105..3433022 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32864.03 Da        Isoelectric Point: 8.1570

>NTDB_id=550745 J5X95_RS17330 WP_094031704.1 3427507..3428406(+) (dprA) [Bacillus amyloliquefaciens strain GKT04]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPNPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=550745 J5X95_RS17330 WP_094031704.1 3427507..3428406(+) (dprA) [Bacillus amyloliquefaciens strain GKT04]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGAATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.903

100

0.709
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368