Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   J5X95_RS16480 Genome accession   NZ_CP072120
Coordinates   3212437..3212721 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3207437..3217721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS16460 (J5X95_16460) - 3208680..3209588 (+) 909 WP_038463811.1 ketopantoate reductase family protein -
  J5X95_RS16465 (J5X95_16465) - 3209620..3210852 (-) 1233 WP_007409644.1 aminopeptidase -
  J5X95_RS16470 (J5X95_16470) - 3210953..3211087 (-) 135 WP_012117458.1 protein YkpC -
  J5X95_RS16475 (J5X95_16475) mreBH 3211159..3212166 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  J5X95_RS16480 (J5X95_16480) abrB 3212437..3212721 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  J5X95_RS16485 (J5X95_16485) - 3212894..3214198 (+) 1305 WP_032874761.1 ATP-binding protein -
  J5X95_RS16490 (J5X95_16490) - 3214200..3215027 (+) 828 WP_038463814.1 gamma-glutamylcyclotransferase -
  J5X95_RS16495 (J5X95_16495) ktrC 3215068..3215733 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  J5X95_RS16500 (J5X95_16500) ade 3215881..3217614 (+) 1734 WP_038463817.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=550744 J5X95_RS16480 WP_003154557.1 3212437..3212721(+) (abrB) [Bacillus amyloliquefaciens strain GKT04]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=550744 J5X95_RS16480 WP_003154557.1 3212437..3212721(+) (abrB) [Bacillus amyloliquefaciens strain GKT04]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543