Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   J5X95_RS14560 Genome accession   NZ_CP072120
Coordinates   2856904..2857482 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2851904..2862482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS21125 - 2852406..2852921 (-) 516 WP_370529535.1 methyl-accepting chemotaxis protein -
  J5X95_RS21130 - 2853213..2853587 (-) 375 Protein_2816 protoglobin domain-containing protein -
  J5X95_RS14545 (J5X95_14545) - 2853820..2855343 (-) 1524 WP_094031628.1 FAD-dependent oxidoreductase -
  J5X95_RS14550 (J5X95_14550) - 2855468..2856325 (+) 858 WP_032871127.1 SDR family oxidoreductase -
  J5X95_RS14555 (J5X95_14555) - 2856355..2856588 (-) 234 WP_007409189.1 IDEAL domain-containing protein -
  J5X95_RS14560 (J5X95_14560) comK 2856904..2857482 (+) 579 WP_003155179.1 competence protein ComK Regulator
  J5X95_RS14565 (J5X95_14565) - 2857628..2857996 (+) 369 WP_061046920.1 iron chaperone -
  J5X95_RS14570 (J5X95_14570) - 2858023..2858394 (+) 372 WP_061046919.1 iron chaperone -
  J5X95_RS14575 (J5X95_14575) - 2858517..2859026 (+) 510 WP_061046918.1 MepB family protein -
  J5X95_RS14580 (J5X95_14580) - 2859260..2859970 (-) 711 WP_061046917.1 YrpD family protein -
  J5X95_RS14585 (J5X95_14585) - 2860166..2860435 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  J5X95_RS14590 (J5X95_14590) - 2860468..2860785 (-) 318 WP_003155166.1 YbjQ family protein -
  J5X95_RS14595 (J5X95_14595) - 2860827..2862296 (-) 1470 WP_015239531.1 sodium:solute symporter family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=550731 J5X95_RS14560 WP_003155179.1 2856904..2857482(+) (comK) [Bacillus amyloliquefaciens strain GKT04]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=550731 J5X95_RS14560 WP_003155179.1 2856904..2857482(+) (comK) [Bacillus amyloliquefaciens strain GKT04]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCTGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823