Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   J5X95_RS13505 Genome accession   NZ_CP072120
Coordinates   2662812..2663603 (+) Length   263 a.a.
NCBI ID   WP_015239427.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 2657812..2668603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS13480 (J5X95_13480) - 2659809..2660693 (+) 885 WP_015417057.1 PhzF family phenazine biosynthesis isomerase -
  J5X95_RS13485 (J5X95_13485) - 2660770..2661354 (+) 585 WP_015417058.1 nitroreductase family protein -
  J5X95_RS13490 (J5X95_13490) - 2661393..2661584 (-) 192 WP_003155508.1 YfhD family protein -
  J5X95_RS13495 (J5X95_13495) - 2661655..2661765 (-) 111 WP_003155504.1 YfhE family protein -
  J5X95_RS13500 (J5X95_13500) - 2661821..2662720 (-) 900 WP_012117113.1 TIGR01777 family oxidoreductase -
  J5X95_RS13505 (J5X95_13505) recX 2662812..2663603 (+) 792 WP_015239427.1 recombination regulator RecX Regulator
  J5X95_RS13510 (J5X95_13510) - 2663610..2663924 (+) 315 WP_032867739.1 YfhH family protein -
  J5X95_RS13515 (J5X95_13515) - 2664068..2665261 (+) 1194 WP_025284446.1 MFS transporter -
  J5X95_RS13520 (J5X95_13520) - 2665301..2665690 (-) 390 WP_094031604.1 DUF2606 family protein -
  J5X95_RS13525 (J5X95_13525) - 2665653..2666564 (-) 912 WP_094031605.1 trypsin-like serine peptidase -
  J5X95_RS13530 (J5X95_13530) - 2666713..2666865 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  J5X95_RS13535 (J5X95_13535) - 2666989..2667258 (+) 270 WP_094031606.1 YfhJ family protein -
  J5X95_RS13540 (J5X95_13540) - 2667391..2667918 (+) 528 WP_015417063.1 SH3 domain-containing protein -
  J5X95_RS13545 (J5X95_13545) - 2668004..2668339 (+) 336 WP_094031607.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30935.10 Da        Isoelectric Point: 5.8035

>NTDB_id=550726 J5X95_RS13505 WP_015239427.1 2662812..2663603(+) (recX) [Bacillus amyloliquefaciens strain GKT04]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYSYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=550726 J5X95_RS13505 WP_015239427.1 2662812..2663603(+) (recX) [Bacillus amyloliquefaciens strain GKT04]
ATGCCCTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACGCCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACAGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAGAATGACGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGTTATGACGGCAGTTATGAAAGCGGAATGAAG
GTTAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795