Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   J5X95_RS11005 Genome accession   NZ_CP072120
Coordinates   2146927..2147364 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2141927..2152364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS10980 (J5X95_10980) - 2142946..2144082 (+) 1137 WP_094031490.1 zinc-dependent alcohol dehydrogenase -
  J5X95_RS10985 (J5X95_10985) - 2144097..2144531 (+) 435 WP_094031491.1 RDD family protein -
  J5X95_RS10990 (J5X95_10990) - 2144649..2144927 (+) 279 WP_263612330.1 YckD family protein -
  J5X95_RS10995 (J5X95_10995) - 2145031..2146467 (+) 1437 WP_076425807.1 glycoside hydrolase family 1 protein -
  J5X95_RS11000 (J5X95_11000) nin/comJ 2146508..2146906 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  J5X95_RS11005 (J5X95_11005) nucA/comI 2146927..2147364 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  J5X95_RS11010 (J5X95_11010) hxlB 2147723..2148280 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  J5X95_RS11015 (J5X95_11015) hxlA 2148277..2148912 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  J5X95_RS11020 (J5X95_11020) - 2149144..2149506 (+) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=550721 J5X95_RS11005 WP_003156588.1 2146927..2147364(-) (nucA/comI) [Bacillus amyloliquefaciens strain GKT04]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=550721 J5X95_RS11005 WP_003156588.1 2146927..2147364(-) (nucA/comI) [Bacillus amyloliquefaciens strain GKT04]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641