Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   J5X95_RS09485 Genome accession   NZ_CP072120
Coordinates   1858368..1858658 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1853368..1863658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS09445 (J5X95_09445) darA 1853385..1853714 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  J5X95_RS09450 (J5X95_09450) - 1853727..1854167 (+) 441 WP_004264730.1 YaaR family protein -
  J5X95_RS09455 (J5X95_09455) holB 1854179..1855168 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  J5X95_RS09460 (J5X95_09460) ricT 1855171..1855998 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  J5X95_RS09465 (J5X95_09465) yabA 1856013..1856372 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  J5X95_RS09470 (J5X95_09470) - 1856433..1857176 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  J5X95_RS09475 (J5X95_09475) - 1857163..1857462 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  J5X95_RS09480 (J5X95_09480) rsmI 1857437..1858318 (+) 882 WP_038456672.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  J5X95_RS09485 (J5X95_09485) abrB 1858368..1858658 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  J5X95_RS09490 (J5X95_09490) metG 1859142..1861133 (+) 1992 WP_020955208.1 methionine--tRNA ligase -
  J5X95_RS09495 (J5X95_09495) - 1861209..1861976 (+) 768 WP_032868379.1 TatD family hydrolase -
  J5X95_RS09500 (J5X95_09500) - 1862111..1863436 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=550716 J5X95_RS09485 WP_169510469.1 1858368..1858658(-) (abrB) [Bacillus amyloliquefaciens strain GKT04]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=550716 J5X95_RS09485 WP_169510469.1 1858368..1858658(-) (abrB) [Bacillus amyloliquefaciens strain GKT04]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979