Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   J5X95_RS02715 Genome accession   NZ_CP072120
Coordinates   525361..526113 (-) Length   250 a.a.
NCBI ID   WP_020956151.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 520361..531113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS02690 (J5X95_02690) mreC 520797..521660 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  J5X95_RS02695 (J5X95_02695) mreB 521691..522704 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  J5X95_RS02700 (J5X95_02700) radC 522796..523491 (-) 696 WP_007408165.1 RadC family protein -
  J5X95_RS02705 (J5X95_02705) - 523523..524092 (-) 570 WP_007408164.1 Maf family protein -
  J5X95_RS02710 (J5X95_02710) - 524233..525234 (-) 1002 WP_012118106.1 SPOR domain-containing protein -
  J5X95_RS02715 (J5X95_02715) comC 525361..526113 (-) 753 WP_020956151.1 prepilin peptidase Machinery gene
  J5X95_RS02720 (J5X95_02720) - 526253..527545 (-) 1293 WP_007408161.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  J5X95_RS02725 (J5X95_02725) - 527604..530246 (-) 2643 WP_020956152.1 valine--tRNA ligase -
  J5X95_RS02730 (J5X95_02730) - 530699..530890 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27129.84 Da        Isoelectric Point: 9.5938

>NTDB_id=550692 J5X95_RS02715 WP_020956151.1 525361..526113(-) (comC) [Bacillus amyloliquefaciens strain GKT04]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLGSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=550692 J5X95_RS02715 WP_020956151.1 525361..526113(-) (comC) [Bacillus amyloliquefaciens strain GKT04]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCTTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACCGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGGTTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584