Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   J4772_RS32685 Genome accession   NZ_CP072117
Coordinates   7920585..7921952 (-) Length   455 a.a.
NCBI ID   WP_209073063.1    Uniprot ID   -
Organism   Cohnella sp. LGH     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7915585..7926952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4772_RS32660 (J4772_32660) ispD 7915757..7916452 (-) 696 WP_116065801.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  J4772_RS32665 (J4772_32665) - 7916709..7917800 (-) 1092 WP_209073061.1 PIN/TRAM domain-containing protein -
  J4772_RS32670 (J4772_32670) - 7917990..7918385 (+) 396 WP_209073062.1 DUF1573 domain-containing protein -
  J4772_RS32675 (J4772_32675) pssA 7918589..7919338 (-) 750 WP_116065798.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  J4772_RS32680 (J4772_32680) disA 7919467..7920570 (-) 1104 WP_246017176.1 DNA integrity scanning diadenylate cyclase DisA -
  J4772_RS32685 (J4772_32685) radA 7920585..7921952 (-) 1368 WP_209073063.1 DNA repair protein RadA Machinery gene
  J4772_RS32690 (J4772_32690) - 7922809..7925886 (-) 3078 WP_209073064.1 MMPL family transporter -
  J4772_RS32695 (J4772_32695) - 7925959..7926597 (-) 639 WP_209073065.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49486.03 Da        Isoelectric Point: 6.5765

>NTDB_id=550628 J4772_RS32685 WP_209073063.1 7920585..7921952(-) (radA) [Cohnella sp. LGH]
MAKVKIKFVCTQCGTESPKWMGKCPGCHEWNTMVEETEKEIKAPVGRSELIRTKEKARAIIDIESGQEPRVETGMSELNR
VLGGGLVPGSLLLVGGDPGIGKSTLLLQTSHSLSAQGLKVLYVSGEESVRQTKLRADRLGALNDRLYVLCETNLETIEEA
ITEVEPDFLVIDSIQTVYRPEVASAPGSVAQVRECTAHFMRISKVNGVATVLVGHVTKEGAIAGPRLLEHMVDCVLYFEG
ERHHTYRILRAVKNRFGSTNEIGIFDMTEDGLREVANPSELFLSERPLGVAGSTVVASIEGTRPVLVELQALVSPTHFPS
PRRMASGFDHHRMSLVIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPATDLAAAVSLASSFKDAPTKPFDAVFGEVGLTGE
VRAVSRAEQRVKEAHKLGFKRVILPEMSIKGWQPPRGIELIGVSTVAEALKAALE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=550628 J4772_RS32685 WP_209073063.1 7920585..7921952(-) (radA) [Cohnella sp. LGH]
ATGGCTAAGGTTAAAATAAAATTCGTGTGCACCCAGTGCGGAACCGAATCTCCGAAATGGATGGGCAAATGCCCGGGCTG
CCACGAATGGAACACGATGGTAGAGGAGACCGAGAAGGAGATCAAGGCGCCTGTCGGACGAAGCGAGCTGATCCGAACGA
AAGAAAAGGCGCGCGCGATCATAGATATAGAAAGCGGGCAAGAACCCCGCGTCGAGACGGGCATGTCCGAGCTGAACCGG
GTGCTCGGAGGAGGGCTTGTTCCCGGCTCGCTGCTGCTTGTCGGCGGAGATCCCGGAATCGGCAAATCGACGCTGCTGCT
GCAAACTTCCCATTCCTTGTCCGCGCAGGGGCTCAAGGTGCTGTACGTGTCCGGCGAGGAATCGGTTCGCCAGACGAAGC
TTCGGGCCGATCGGCTGGGCGCATTGAACGACAGACTGTACGTTCTGTGCGAGACGAATTTGGAAACGATTGAAGAGGCG
ATTACTGAAGTGGAGCCCGATTTTCTCGTGATCGATTCCATTCAGACGGTTTATCGGCCGGAGGTCGCTTCCGCGCCGGG
CAGCGTGGCGCAGGTGCGGGAATGTACCGCCCACTTTATGAGAATATCTAAAGTAAACGGAGTGGCGACGGTGCTCGTCG
GCCATGTGACCAAGGAAGGCGCGATTGCCGGGCCGAGGCTGCTGGAGCATATGGTCGACTGCGTGCTGTACTTCGAGGGC
GAACGTCATCATACTTATCGCATTTTGCGGGCGGTGAAGAACCGCTTCGGCTCCACGAACGAGATCGGCATTTTCGATAT
GACGGAGGACGGCTTGAGGGAAGTGGCCAATCCTTCGGAGCTATTCCTCTCCGAGAGACCGCTCGGGGTCGCGGGCTCTA
CGGTCGTAGCCAGCATAGAGGGAACTCGTCCCGTGCTCGTGGAGCTGCAGGCGCTCGTGTCTCCGACTCATTTTCCGTCT
CCGCGGCGAATGGCTTCAGGGTTCGATCACCATCGGATGTCGCTCGTTATCGCCGTGTTGGAGAAACGGATGGGAATGTT
CCTGCAAAATCAGGACGCCTATCTGAACGTTGCGGGCGGAGTAAAGCTGGACGAACCCGCGACGGATTTGGCTGCTGCGG
TCAGCCTCGCGTCGAGCTTCAAGGATGCTCCGACCAAGCCGTTCGACGCCGTCTTCGGAGAGGTCGGCCTGACCGGGGAG
GTGCGGGCCGTCTCGCGCGCGGAGCAAAGAGTCAAGGAAGCGCACAAGTTAGGCTTCAAACGCGTCATTTTGCCGGAGAT
GAGCATAAAAGGCTGGCAGCCGCCACGGGGCATCGAGCTGATCGGCGTCAGTACGGTGGCCGAGGCATTAAAGGCTGCAT
TGGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(345-426)

AAA domain (AAA_25)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.031

100

0.675
  radA Streptococcus mitis NCTC 12261

57.871

99.121

0.574
  radA Streptococcus mitis SK321

57.871

99.121

0.574
  radA Streptococcus pneumoniae Rx1

57.65

99.121

0.571
  radA Streptococcus pneumoniae D39

57.65

99.121

0.571
  radA Streptococcus pneumoniae R6

57.65

99.121

0.571
  radA Streptococcus pneumoniae TIGR4

57.65

99.121

0.571