Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   J5M87_RS07495 Genome accession   NZ_CP072115
Coordinates   1593267..1595069 (-) Length   600 a.a.
NCBI ID   WP_154608284.1    Uniprot ID   A0A6I4RHW2
Organism   Streptococcus zhangguiae strain zg-86     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1588267..1600069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5M87_RS07480 (J5M87_07480) - 1590592..1591086 (-) 495 WP_154608281.1 LURP-one-related/scramblase family protein -
  J5M87_RS07485 (J5M87_07485) - 1591285..1592277 (-) 993 WP_154608282.1 peptidylprolyl isomerase -
  J5M87_RS07490 (J5M87_07490) - 1592339..1593058 (-) 720 WP_154608283.1 O-methyltransferase -
  J5M87_RS07495 (J5M87_07495) pepF 1593267..1595069 (-) 1803 WP_154608284.1 oligoendopeptidase F Regulator
  J5M87_RS07500 (J5M87_07500) coiA 1595132..1596094 (-) 963 WP_154608285.1 competence protein CoiA Machinery gene
  J5M87_RS07505 (J5M87_07505) metG 1596381..1598381 (-) 2001 WP_154608286.1 methionine--tRNA ligase -
  J5M87_RS07510 (J5M87_07510) - 1598579..1599406 (+) 828 WP_154608287.1 exodeoxyribonuclease III -
  J5M87_RS07515 (J5M87_07515) - 1599416..1599796 (+) 381 WP_154608397.1 VOC family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69138.03 Da        Isoelectric Point: 4.5022

>NTDB_id=550547 J5M87_RS07495 WP_154608284.1 1593267..1595069(-) (pepF) [Streptococcus zhangguiae strain zg-86]
MTKQRSEIEEKYQWDLTTIFPTDEAWEGELAALQADVEKTTGFAGHLLDSAKSLLEISETQLELMRRMETLYVYASMKND
QDTREGKYQEFQAKALGLYSTLSQAFAFYEPEFLEATEEQLAAFMEEEPALQQYSHQFEKLLAGKKHVLSQEVEEVLAAT
SEVFDAPSETFSVLDNASIRFPEITDEDGNLVPLSHGSYISFMESSNRVVRQEAYEGLYSTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHAALSANFIPESVYDTLVEAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDVDYKFTYEDALA
KATDTLTIFGDEYSAQVKEAFENRWIDVHENEGKRSGAYSGGAYDTNAFMLLNWQDTLDNLYTLIHETGHSLHSMFTRKN
QPYVYGHYSIFLAEIASTTNENILTEKLLSEVEDDKTRFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTAEF
LNNLYSEINEKYYGLSAEENPQIQFEWARIPHFYYDFYVYQYATGFAAASALSHKIVHGSQEDKERYLDYLKAGSSDYPL
NVIKKAGVDMTKEDYLNDAFKVFEDRLTELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=550547 J5M87_RS07495 WP_154608284.1 1593267..1595069(-) (pepF) [Streptococcus zhangguiae strain zg-86]
ATGACAAAACAACGTAGTGAAATTGAAGAAAAATACCAGTGGGACTTGACCACCATTTTTCCAACGGATGAAGCATGGGA
AGGCGAACTAGCTGCCCTACAAGCTGATGTAGAAAAGACAACGGGATTTGCTGGCCACTTGCTTGATTCAGCAAAGAGTT
TACTAGAAATTAGTGAAACTCAATTAGAACTCATGCGCCGTATGGAAACGCTTTATGTCTACGCTTCAATGAAAAATGAC
CAAGATACACGTGAAGGAAAATACCAAGAATTTCAAGCGAAGGCTTTGGGACTTTATTCAACTCTTTCACAAGCCTTTGC
CTTCTACGAACCAGAATTCTTAGAAGCGACAGAAGAGCAGCTGGCAGCTTTCATGGAAGAAGAACCAGCTTTGCAACAGT
ATAGCCACCAATTTGAGAAACTATTAGCAGGCAAGAAACACGTCCTATCTCAAGAAGTAGAAGAAGTATTAGCTGCAACA
AGTGAAGTGTTCGATGCACCGTCAGAAACCTTTTCTGTTCTTGATAATGCTAGCATTCGTTTCCCAGAAATAACAGATGA
AGATGGGAATCTTGTTCCCCTATCACACGGCAGTTACATTTCGTTTATGGAATCAAGCAACCGTGTAGTTCGTCAAGAAG
CCTATGAAGGTCTGTATAGCACGTATGAGCAATTCCAACACACCTATGCGAAGACCTTGCAATCCAATGTTAAAGTCAAT
AACTTAAAGGCCCGCTTGCGGAAGTACGACAGCGCTCGCCATGCAGCCTTGTCTGCTAACTTTATTCCAGAGTCTGTTTA
CGATACTTTGGTAGAGGCTGTCAATAAACATCTGCCACTCTTGCATCGTTATATCAATTTGCGGAAGAAATTATTGGGAA
TTGACGATTTGAAAATGTACGATATGTACACACCGCTTTCAGATGTTGATTACAAATTCACCTATGAAGATGCTTTAGCT
AAGGCTACGGATACCTTAACAATTTTTGGTGATGAATACAGTGCCCAAGTTAAGGAAGCCTTTGAAAATCGTTGGATTGA
TGTTCATGAAAATGAAGGGAAACGCTCAGGAGCTTACTCTGGAGGAGCTTATGATACCAATGCTTTCATGCTCTTGAACT
GGCAAGATACGCTTGATAATCTCTATACTCTGATTCATGAGACAGGGCATTCGCTTCATTCCATGTTTACACGTAAGAAT
CAGCCATATGTGTATGGTCATTATTCTATTTTCTTGGCAGAAATTGCTTCTACGACTAATGAAAATATCCTGACAGAAAA
ACTATTGTCAGAAGTCGAAGATGACAAGACACGCTTTGCCATTCTCAATCATTACTTGGATGGCTTCCGTGGTACAGTAT
TTCGTCAGACACAATTTGCTGAGTTTGAACAGGCAATCTACAAAGCCGATCAAGAAGGTCAGGTATTGACAGCTGAATTT
TTGAATAATCTATATAGTGAAATCAATGAGAAATACTATGGTTTATCTGCTGAGGAAAACCCACAAATTCAATTTGAATG
GGCTCGTATTCCGCATTTCTACTATGATTTTTACGTATATCAATATGCGACAGGCTTTGCAGCAGCTTCTGCTCTTTCTC
ATAAGATTGTGCATGGAAGTCAAGAAGACAAGGAGCGGTATTTGGATTACCTCAAAGCAGGAAGTTCAGATTATCCATTA
AATGTTATCAAAAAAGCAGGTGTTGACATGACAAAAGAAGACTACCTGAACGATGCCTTCAAGGTATTTGAAGATCGTTT
GACAGAGCTAGAAGCTCTAGTTGAAAAAGGTGTTCACCTGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I4RHW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.333

100

0.693