Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   LUY99_RS04975 Genome accession   NZ_CP089479
Coordinates   975641..976354 (+) Length   237 a.a.
NCBI ID   WP_001031454.1    Uniprot ID   A0A0H2XG68
Organism   Staphylococcus aureus strain 0073_III_ST239     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 970641..981354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY99_RS04910 - 971396..971659 (-) 264 WP_001205732.1 hypothetical protein -
  LUY99_RS04915 - 971668..971928 (-) 261 WP_001814567.1 DUF1108 family protein -
  LUY99_RS04920 - 971909..972238 (-) 330 WP_000138304.1 hypothetical protein -
  LUY99_RS04925 - 972328..972489 (-) 162 WP_000066017.1 DUF1270 domain-containing protein -
  LUY99_RS04930 - 972486..972806 (-) 321 WP_001120197.1 DUF771 domain-containing protein -
  LUY99_RS04935 - 972865..973497 (+) 633 WP_000275058.1 hypothetical protein -
  LUY99_RS04940 - 973512..973652 (-) 141 WP_000939496.1 hypothetical protein -
  LUY99_RS04945 - 973683..973880 (-) 198 WP_001148861.1 hypothetical protein -
  LUY99_RS04950 - 973896..974645 (-) 750 WP_001148653.1 phage antirepressor KilAC domain-containing protein -
  LUY99_RS04955 - 974696..975025 (+) 330 WP_000180411.1 hypothetical protein -
  LUY99_RS04960 - 975014..975229 (-) 216 WP_001025404.1 MW1434 family type I TA system toxin -
  LUY99_RS04965 - 975245..975508 (-) 264 WP_000854072.1 helix-turn-helix transcriptional regulator -
  LUY99_RS04970 - 975505..975678 (-) 174 WP_001801500.1 hypothetical protein -
  LUY99_RS04975 irvR 975641..976354 (+) 714 WP_001031454.1 XRE family transcriptional regulator Regulator
  LUY99_RS04980 - 976370..977302 (+) 933 WP_000759682.1 exonuclease domain-containing protein -
  LUY99_RS04985 - 977308..977649 (+) 342 WP_000591749.1 hypothetical protein -
  LUY99_RS04990 - 977853..978035 (+) 183 WP_000705248.1 hypothetical protein -
  LUY99_RS04995 - 978135..978599 (+) 465 WP_000825947.1 hypothetical protein -
  LUY99_RS05000 - 978658..979695 (+) 1038 WP_000857191.1 site-specific integrase -
  LUY99_RS05005 sph 979752..980576 (+) 825 Protein_960 sphingomyelin phosphodiesterase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27017.58 Da        Isoelectric Point: 5.0545

>NTDB_id=550525 LUY99_RS04975 WP_001031454.1 975641..976354(+) (irvR) [Staphylococcus aureus strain 0073_III_ST239]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPPRQENVLNYANEQLEEQNSKGDNVVDINSYKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=550525 LUY99_RS04975 WP_001031454.1 975641..976354(+) (irvR) [Staphylococcus aureus strain 0073_III_ST239]
ATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGCGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCCCCGCCAAGAAAACGTACTTAACTATGCAAATGAACAATTGGAAGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAGGAGAAAACTCCAGTTAACGTCAATGGTTGCGTCTCTGCTGGTGTAG
GAGAACGTTTACACGATGAAACGCTATTTACTGAAATGGTTAAAGGACCTATCCCCACACACGATTTAGCGTTAAAAGTA
AATGGTGATTCTATGGAACCTATGTTTAAAGATGGCGAAATCATATTTGTGGAGAAAACTCACAATATAAAGAATGGACA
AATTGGTATATTCATCATTGAAGAAGAAGCGTACGTTAAGAAAGTCTTTGTTGAAGATGATAGATTGACTCTAGTTTCAC
TAAATAAAGATTACGACGATCTACACTTTTATAGAAATGAAAGTGTGAGGTTAATTGGAAAAGTTATTTTATAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(127-236)

Helix-turn-helix (HTH_3)

(13-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

33.929

100

0.401