Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   BEST7003_RS20170 Genome accession   NZ_AP012496
Coordinates   4032992..4033840 (-) Length   282 a.a.
NCBI ID   WP_003226832.1    Uniprot ID   P26497
Organism   Bacillus subtilis BEST7003     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4027992..4038840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEST7003_RS20150 (BEST7003_3997) yyaE 4028506..4030509 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  BEST7003_RS20155 (BEST7003_3998) yyzM 4030560..4030766 (-) 207 WP_003226838.1 DUF951 family protein -
  BEST7003_RS20160 (BEST7003_3999) - 4030860..4031876 (-) 1017 WP_010886647.1 membrane protein -
  BEST7003_RS20165 (BEST7003_4000) yyaC 4032336..4032953 (+) 618 WP_003243890.1 spore protease YyaC -
  BEST7003_RS20170 (BEST7003_4001) spo0J 4032992..4033840 (-) 849 WP_003226832.1 stage 0 sporulation protein Spo0J Regulator
  BEST7003_RS20175 (BEST7003_4002) soj 4033833..4034594 (-) 762 WP_003219244.1 sporulation initiation inhibitor protein Soj -
  BEST7003_RS20180 (BEST7003_4003) yyaB 4034842..4035282 (+) 441 WP_003244005.1 PH domain-containing protein -
  BEST7003_RS20185 (BEST7003_4004) noc 4035333..4036184 (-) 852 WP_003226829.1 nucleoid occlusion protein -
  BEST7003_RS20190 (BEST7003_4005) rsmG 4036306..4037025 (-) 720 WP_003243029.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 32210.16 Da        Isoelectric Point: 8.3881

>NTDB_id=55048 BEST7003_RS20170 WP_003226832.1 4032992..4033840(-) (spo0J) [Bacillus subtilis BEST7003]
MAKGLGKGINALFNQVDLSEETVEEIKIADLRPNPYQPRKHFDDEALAELKESVLQHGILQPLIVRKSLKGYDIVAGERR
FRAAKLAGLDTVPAIVRELSEALMREIALLENLQREDLSPLEEAQAYDSLLKHLDLTQEQLAKRLGKSRPHIANHLRLLT
LPENIQQLIAEGTLSMGHGRTLLGLKNKNKLEPLVQKVIAEQLNVRQLEQLIQQLNQNVPRETKKKEPVKDAVLKERESY
LQNYFGTTVNIKRQKKKGKIEIEFFSNEDLDRILELLSERES

Nucleotide


Download         Length: 849 bp        

>NTDB_id=55048 BEST7003_RS20170 WP_003226832.1 4032992..4033840(-) (spo0J) [Bacillus subtilis BEST7003]
ATGGCTAAAGGCCTTGGAAAAGGGATTAATGCGTTATTTAATCAGGTAGATTTGTCTGAAGAGACAGTTGAAGAAATTAA
AATTGCCGATTTACGCCCTAATCCTTATCAGCCAAGAAAACACTTTGATGACGAGGCATTAGCTGAACTAAAAGAATCTG
TGCTGCAGCATGGCATTCTTCAGCCGCTTATCGTCAGAAAATCTTTAAAAGGCTATGATATTGTTGCGGGTGAACGGCGT
TTTCGAGCGGCAAAGCTGGCAGGTTTAGATACAGTTCCGGCCATTGTCCGTGAATTATCAGAGGCGTTAATGAGGGAAAT
TGCTTTATTAGAAAACCTTCAGCGTGAAGATTTATCTCCGCTTGAAGAGGCTCAGGCATATGACTCCCTTTTGAAACACT
TAGATCTCACACAAGAGCAGCTTGCCAAACGTCTTGGGAAAAGCAGACCGCATATTGCGAATCATTTAAGACTGCTGACA
CTGCCAGAAAATATTCAACAGCTTATTGCCGAAGGCACGCTTTCTATGGGACATGGACGCACGCTTCTTGGCTTAAAAAA
CAAAAATAAGCTTGAACCGCTGGTACAAAAAGTGATTGCGGAGCAGCTCAATGTTCGCCAACTTGAGCAGCTGATTCAGC
AGTTGAATCAGAATGTTCCACGTGAAACAAAGAAAAAAGAACCTGTGAAAGATGCGGTTCTAAAAGAACGGGAATCCTAT
CTCCAAAATTATTTTGGAACAACAGTTAATATTAAAAGACAGAAGAAAAAAGGCAAAATCGAAATTGAATTTTTCTCTAA
TGAAGACCTTGACCGGATTTTAGAGCTTTTGTCTGAACGAGAATCATAA

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(163-214)

ParB/Sulfiredoxin domain (ParB_N)

(24-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5NOC
  PDB 6SDK

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.923

92.199

0.387

Multiple sequence alignment