Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CYAN10605_RS11075 Genome accession   NC_019776
Coordinates   2659309..2660607 (-) Length   432 a.a.
NCBI ID   WP_015220030.1    Uniprot ID   A0AAF0ZGQ9
Organism   Cyanobacterium aponinum PCC 10605     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2654309..2665607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYAN10605_RS11055 (Cyan10605_2215) nblS 2654318..2656282 (-) 1965 WP_015220026.1 two-component system sensor histidine kinase NblS -
  CYAN10605_RS11060 (Cyan10605_2216) - 2656443..2657018 (+) 576 WP_015220027.1 DUF4340 domain-containing protein -
  CYAN10605_RS11065 (Cyan10605_2217) - 2657020..2657856 (-) 837 WP_015220028.1 MBL fold metallo-hydrolase -
  CYAN10605_RS11070 (Cyan10605_2218) - 2657909..2659126 (-) 1218 WP_015220029.1 zinc ribbon domain-containing protein -
  CYAN10605_RS11075 (Cyan10605_2219) comA 2659309..2660607 (-) 1299 WP_015220030.1 phospholipase D-like domain-containing protein Machinery gene
  CYAN10605_RS11080 (Cyan10605_2220) - 2660628..2661308 (-) 681 WP_015220031.1 uracil-DNA glycosylase family protein -
  CYAN10605_RS11085 (Cyan10605_2221) purQ 2661410..2662090 (-) 681 WP_015220032.1 phosphoribosylformylglycinamidine synthase subunit PurQ -
  CYAN10605_RS11090 (Cyan10605_2222) purS 2662111..2662374 (-) 264 WP_015220033.1 phosphoribosylformylglycinamidine synthase subunit PurS -
  CYAN10605_RS11095 (Cyan10605_2223) - 2662528..2663163 (-) 636 WP_015220034.1 biopolymer transporter ExbD -
  CYAN10605_RS11100 (Cyan10605_2224) sodN 2663391..2663876 (+) 486 WP_015220035.1 superoxide dismutase, Ni -
  CYAN10605_RS11105 (Cyan10605_2225) sodX 2663909..2664259 (+) 351 WP_015220036.1 nickel-type superoxide dismutase maturation protease -
  CYAN10605_RS11110 (Cyan10605_2226) dnaJ 2664365..2665495 (+) 1131 WP_015220037.1 molecular chaperone DnaJ -

Sequence

Protein


Download         Length: 432 a.a.        Molecular weight: 48545.32 Da        Isoelectric Point: 7.3464

>NTDB_id=55037 CYAN10605_RS11075 WP_015220030.1 2659309..2660607(-) (comA) [Cyanobacterium aponinum PCC 10605]
MLKIISFPLGIIFGLIILGGCHNSPPKLPPLAQEESIQVYFNHNQAKGKEYEEPYRKIKRFGDDLETVLIEQINSANQTI
DIAIQELNLARLARAIVEKKKQGVKIRIVTENNYNKPLNQLPNNHGLAILKRANIPIIDDTEDGSKGSGLMHHKFVIIDQ
KKVVTGSANFTLSGIHGDFDNQETRGNTNHLIVFNSQEMAKIFTQEFNYLWGDGVGKKKDSLFGLNKPERRTKIVNIGSS
SIVVKFSPNSRSTLWENSSNGIIARELAKANSSIDLALFVFSDQEIANTLEKESLSGVKIRVLIDPNFAYQYYSEGLDLL
GVAIPRKCVYENDNNPWQQPLKTVGIPALPLGDKLHHKFAIIDRYIVITGSHNWSNSANHINDETLLVIYNPLIAQHFQR
EFDYLYHDAILGVSSELKKEIDQENSKCGLSN

Nucleotide


Download         Length: 1299 bp        

>NTDB_id=55037 CYAN10605_RS11075 WP_015220030.1 2659309..2660607(-) (comA) [Cyanobacterium aponinum PCC 10605]
ATGCTTAAAATAATTAGTTTTCCCCTAGGGATAATTTTTGGCTTAATAATATTGGGTGGTTGTCATAATTCTCCACCTAA
ATTGCCACCTTTAGCTCAAGAGGAAAGCATTCAAGTTTATTTTAATCACAATCAAGCTAAAGGGAAAGAATACGAAGAAC
CCTATCGTAAAATTAAAAGATTTGGCGATGATTTAGAAACAGTTTTAATTGAGCAAATTAACAGTGCAAATCAAACTATT
GATATAGCAATTCAAGAATTAAATTTAGCACGATTAGCAAGGGCGATTGTAGAGAAAAAAAAGCAGGGTGTAAAAATAAG
AATTGTCACGGAAAATAATTATAATAAACCTTTAAATCAGTTGCCTAATAATCATGGTTTAGCAATTTTGAAAAGAGCTA
ATATACCTATCATTGACGATACGGAAGATGGGAGTAAGGGTAGCGGTTTAATGCACCATAAATTTGTTATTATTGATCAG
AAAAAAGTTGTAACCGGATCAGCAAATTTTACTCTTAGTGGTATTCATGGAGATTTTGATAATCAAGAAACAAGGGGAAA
TACAAATCATTTAATTGTATTTAATAGTCAAGAAATGGCTAAAATTTTTACTCAAGAATTTAACTACTTATGGGGTGATG
GAGTCGGAAAAAAGAAAGATAGCTTATTTGGTTTAAATAAACCAGAAAGACGCACAAAAATAGTAAATATCGGTAGTAGT
TCTATTGTGGTAAAATTTTCTCCTAATAGTCGATCAACTCTTTGGGAAAATAGTAGTAATGGTATTATTGCTAGGGAATT
GGCAAAGGCGAATAGCTCCATCGATTTAGCGTTATTTGTTTTCAGTGATCAAGAAATAGCAAATACCCTTGAAAAAGAAT
CATTATCGGGGGTTAAAATAAGGGTTTTAATCGATCCTAATTTTGCTTATCAATATTATAGTGAAGGGCTTGATTTATTA
GGTGTTGCAATACCAAGAAAATGTGTTTATGAGAATGATAATAATCCTTGGCAACAACCCCTAAAGACTGTTGGCATTCC
AGCTCTACCATTAGGAGATAAATTACACCATAAATTTGCTATAATCGACCGTTACATAGTTATTACAGGTTCTCATAATT
GGTCTAATTCTGCCAATCATATTAATGATGAAACTTTATTAGTTATTTATAATCCTCTAATCGCTCAACATTTTCAAAGA
GAATTTGATTATCTTTATCACGATGCAATATTAGGAGTTTCTTCGGAGTTAAAAAAGGAAATTGATCAAGAAAATTCAAA
ATGTGGGCTATCGAATTAA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(264-405)

PLD-like domain (PLDc_2)

(69-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

47.084

100

0.505

Multiple sequence alignment