Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   J5V93_RS26505 Genome accession   NZ_CP072061
Coordinates   5179294..5180670 (+) Length   458 a.a.
NCBI ID   WP_199627579.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS06/1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5174294..5185670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5V93_RS26485 (J5V93_26485) ctsR 5174493..5174954 (+) 462 WP_002029353.1 transcriptional regulator CtsR -
  J5V93_RS26490 (J5V93_26490) - 5175124..5175672 (+) 549 WP_002169333.1 UvrB/UvrC motif-containing protein -
  J5V93_RS26495 (J5V93_26495) - 5175677..5176741 (+) 1065 WP_002169332.1 protein arginine kinase -
  J5V93_RS26500 (J5V93_26500) clpC 5176764..5179199 (+) 2436 WP_002063405.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  J5V93_RS26505 (J5V93_26505) radA 5179294..5180670 (+) 1377 WP_199627579.1 DNA repair protein RadA Machinery gene
  J5V93_RS26510 (J5V93_26510) disA 5180674..5181747 (+) 1074 WP_000392162.1 DNA integrity scanning diadenylate cyclase DisA -
  J5V93_RS26515 (J5V93_26515) - 5181908..5183011 (+) 1104 WP_002063406.1 PIN/TRAM domain-containing protein -
  J5V93_RS26520 (J5V93_26520) ispD 5183028..5183708 (+) 681 WP_215563876.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  J5V93_RS26525 (J5V93_26525) ispF 5183822..5184298 (+) 477 WP_000488386.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49855.54 Da        Isoelectric Point: 6.9053

>NTDB_id=550361 J5V93_RS26505 WP_199627579.1 5179294..5180670(+) (radA) [Bacillus mycoides strain JAS06/1]
MAKKKTKFTCQECGYQSPKYMGKCPGCGQWNTLVEEMEPVVSSRRLNYANAIQSEVTKPRRLTEVETKSEARIETEFQEF
NRVLGGGIVDGSLVLIGGDPGIGKSTLLLQISSQLADSLYDVLYISGEESAKQIKLRADRLHVKGSNLFVVAETDLQRIA
AHIEEMNPAFVVIDSIQTIHLPEVTSAPGSVTQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGPRMLEHMVDAVLYF
EGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEERPVGVAGSTVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLIMAVLEKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKATAPADAVIGEVGLT
GEIRRVSRIEQRVQEAAKLGFQRAIIPRKNLGGWTIPDGIEVVGVSNLGEALRLTLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=550361 J5V93_RS26505 WP_199627579.1 5179294..5180670(+) (radA) [Bacillus mycoides strain JAS06/1]
ATGGCTAAAAAGAAAACAAAATTTACATGTCAAGAATGTGGTTATCAGTCGCCAAAATATATGGGGAAATGTCCTGGATG
TGGTCAATGGAATACGCTTGTTGAAGAGATGGAACCAGTTGTATCATCAAGACGCCTTAATTATGCCAATGCAATTCAAT
CAGAAGTAACAAAACCAAGACGCTTAACAGAGGTAGAAACAAAGTCTGAGGCGCGTATTGAAACGGAATTTCAAGAGTTT
AACCGTGTACTTGGTGGCGGGATTGTAGATGGATCTTTAGTACTTATTGGTGGAGACCCTGGGATTGGGAAATCAACATT
GTTATTACAAATTTCATCGCAATTAGCAGATTCTTTATATGATGTACTATACATATCAGGTGAGGAGTCAGCAAAGCAGA
TCAAACTTCGTGCAGATCGTTTGCATGTAAAGGGTAGTAATCTATTTGTTGTAGCAGAGACTGATTTACAGAGAATTGCA
GCGCACATTGAGGAGATGAATCCAGCTTTTGTTGTTATTGACTCCATCCAGACGATACATTTACCTGAAGTGACGTCAGC
CCCAGGGAGTGTAACGCAAGTACGTGAATGTACAGCGGAATTAATGAAACTTGCAAAGACGAAAGGGATTCCTATTTTTA
TCGTCGGACATGTGACAAAAGAAGGGGCAATTGCAGGACCACGTATGCTAGAACATATGGTTGATGCAGTTCTTTACTTT
GAAGGAGATCGTCACCATACATATCGTATTTTGCGAGCTGTGAAGAACCGTTTTGGTTCCACAAATGAAATGGGTATCTT
TGAAATGAAGGAACTAGGTCTTGCAGAAGTACTAAATCCTTCTGAAATTTTCCTTGAGGAACGTCCAGTTGGAGTTGCAG
GATCCACAGTGGTTGCTTCAATGGAAGGAACAAGGCCGGTTTTAGTAGAAATACAAGCATTAATCTCCCCTACTAGTTTT
GGAAATCCTCGAAGAATGGCGACGGGAATTGATCATAACCGCGTTTCACTTATTATGGCAGTGCTAGAAAAAAGAACAGG
TTTATTGTTGCAAAATCAAGACGCATATTTAAAAGTTGCGGGTGGCTTGAAATTAGATGAACCAGCAATCGATTTAGCTG
TCGCCTTAAGTATTGCTTCAAGTTTCAGAGATAAAGCTACTGCACCAGCCGATGCGGTAATAGGAGAAGTAGGCCTAACT
GGAGAAATAAGAAGAGTATCAAGAATTGAACAACGTGTACAAGAAGCAGCGAAATTAGGATTTCAACGTGCTATTATTCC
TAGAAAAAATTTGGGAGGATGGACAATTCCAGATGGGATTGAGGTAGTAGGTGTTTCTAATTTAGGAGAAGCGCTTCGTT
TGACATTAGGAGGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(60-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.51

100

0.747
  radA Streptococcus pneumoniae Rx1

64.238

98.908

0.635
  radA Streptococcus pneumoniae D39

64.238

98.908

0.635
  radA Streptococcus pneumoniae R6

64.238

98.908

0.635
  radA Streptococcus pneumoniae TIGR4

64.238

98.908

0.635
  radA Streptococcus mitis SK321

64.238

98.908

0.635
  radA Streptococcus mitis NCTC 12261

64.018

98.908

0.633