Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   J5V93_RS26195 Genome accession   NZ_CP072061
Coordinates   5122079..5122363 (-) Length   94 a.a.
NCBI ID   WP_000843037.1    Uniprot ID   A0A366FUU6
Organism   Bacillus mycoides strain JAS06/1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 5117079..5127363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5V93_RS26160 (J5V93_26160) tmk 5117233..5117859 (+) 627 WP_002130202.1 dTMP kinase -
  J5V93_RS26165 (J5V93_26165) holB 5117895..5118878 (+) 984 WP_215563870.1 DNA polymerase III subunit delta' -
  J5V93_RS26170 (J5V93_26170) - 5118884..5119711 (+) 828 WP_002009637.1 stage 0 sporulation family protein -
  J5V93_RS26175 (J5V93_26175) yabA 5119726..5120076 (+) 351 WP_002009639.1 DNA replication initiation control protein YabA -
  J5V93_RS26180 (J5V93_26180) - 5120197..5120937 (+) 741 WP_002130206.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  J5V93_RS26185 (J5V93_26185) - 5120924..5121214 (+) 291 WP_002130207.1 GIY-YIG nuclease family protein -
  J5V93_RS26190 (J5V93_26190) rsmI 5121183..5122058 (+) 876 WP_002130208.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  J5V93_RS26195 (J5V93_26195) abrB 5122079..5122363 (-) 285 WP_000843037.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  J5V93_RS26200 (J5V93_26200) metG 5122857..5124866 (+) 2010 WP_078173487.1 methionine--tRNA ligase -
  J5V93_RS26205 (J5V93_26205) - 5125032..5125799 (+) 768 WP_098633223.1 TatD family hydrolase -
  J5V93_RS26210 (J5V93_26210) rnmV 5126060..5126617 (+) 558 WP_002029323.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10476.14 Da        Isoelectric Point: 4.7174

>NTDB_id=550359 J5V93_RS26195 WP_000843037.1 5122079..5122363(-) (abrB) [Bacillus mycoides strain JAS06/1]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QVLNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=550359 J5V93_RS26195 WP_000843037.1 5122079..5122363(-) (abrB) [Bacillus mycoides strain JAS06/1]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTTGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTACGTTGATGATGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGTAAAGAAGGCGCTGAA
CAAGTCTTAAATGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366FUU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

84.043

100

0.84