Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   J5V93_RS25995 Genome accession   NZ_CP072061
Coordinates   5084608..5085735 (+) Length   375 a.a.
NCBI ID   WP_002016486.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS06/1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5079608..5090735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5V93_RS25965 (J5V93_25965) spoIIIJ 5079644..5080411 (-) 768 WP_002130197.1 YidC family membrane integrase SpoIIIJ -
  J5V93_RS25970 (J5V93_25970) rnpA 5080464..5080811 (-) 348 WP_002089963.1 ribonuclease P protein component -
  J5V93_RS25975 (J5V93_25975) rpmH 5080888..5081022 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  J5V93_RS25980 (J5V93_25980) dnaA 5081586..5082926 (+) 1341 WP_002016481.1 chromosomal replication initiator protein DnaA -
  J5V93_RS25985 (J5V93_25985) dnaN 5083109..5084254 (+) 1146 WP_002130198.1 DNA polymerase III subunit beta -
  J5V93_RS25990 (J5V93_25990) yaaA 5084383..5084595 (+) 213 WP_002016484.1 S4 domain-containing protein YaaA -
  J5V93_RS25995 (J5V93_25995) recF 5084608..5085735 (+) 1128 WP_002016486.1 DNA replication/repair protein RecF Machinery gene
  J5V93_RS26000 (J5V93_26000) gyrB 5085774..5087696 (+) 1923 WP_002034986.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  J5V93_RS26005 (J5V93_26005) gyrA 5087785..5090256 (+) 2472 WP_002016488.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43500.76 Da        Isoelectric Point: 6.8418

>NTDB_id=550357 J5V93_RS25995 WP_002016486.1 5084608..5085735(+) (recF) [Bacillus mycoides strain JAS06/1]
MFITEIQLKNYRNYEHLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDYGNIKGRLQRRNSS
VSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVEGIEHETLKEAKTIHVTNGTVDCEIDRK

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=550357 J5V93_RS25995 WP_002016486.1 5084608..5085735(+) (recF) [Bacillus mycoides strain JAS06/1]
TTGTTTATTACAGAAATACAATTAAAAAACTATCGCAATTATGAGCATTTAGAGCTTTCCTTTGAGGATAAAGTCAATGT
AATTATTGGTGAAAATGCGCAAGGGAAAACGAATCTGATGGAAGCTATTTATGTATTGGCGATGGCGAAATCTCATAGAA
CTTCGAACGATCGTGAACTCATTCGTTGGGATGAGGATTATGGTAATATAAAAGGTAGATTACAAAGGCGAAATAGTTCA
GTATCCTTAGAATTAAATATTTCAAAAAAAGGTAAAAAGGCAAAGTTAAATCAGTTAGAACAACAAAAATTGAGCCAGTA
TATTGGTGAAATGAATGTTGTTATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTACGAAGACGCT
TTTTGGATATGGAACTTGGACAAATAGCTCCGGTCTATTTGTATGAATTAAGTCAATATCAAAAGGTACTCACGCAACGA
AATCATTTACTTAAGAAGATGCAAGGGAATAGTAAAAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTGCAAAAATTTTGCGAAAACGTTTTGAGTTTTTGCATTTACTACAAGAATGGGCTGCTCCAATTCATCGCGGAA
TTAGCAGGGGATTAGAGGAGTTAGAAATCGTTTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAGGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTTCGGGGTACAACTTTACTTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCACAAGGACAACAACGAACAACCGCACTAT
CCCTAAAATTGGCTGAAATTGAATTGATATACTCAGAGGTTAAGGAATATCCAATTCTTTTACTAGATGATGTGTTATCA
GAATTAGATGATTATCGTCAATCGCATCTGCTAAATACAATTCAAGGAAAAGTACAAACCTTTGTGACAACGACGAGTGT
CGAGGGAATTGAACACGAAACATTGAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGACA
GAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.848

98.133

0.656