Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   J5V93_RS19870 Genome accession   NZ_CP072061
Coordinates   3907670..3908713 (-) Length   347 a.a.
NCBI ID   WP_002129093.1    Uniprot ID   A0A1S9TG17
Organism   Bacillus mycoides strain JAS06/1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3902670..3913713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5V93_RS19825 (J5V93_19825) - 3903068..3903268 (-) 201 WP_002015009.1 YqzE family protein -
  J5V93_RS19830 (J5V93_19830) - 3903307..3903804 (-) 498 WP_215563613.1 shikimate kinase -
  J5V93_RS19835 (J5V93_19835) - 3903956..3904606 (-) 651 WP_002190664.1 2OG-Fe(II) oxygenase -
  J5V93_RS19840 (J5V93_19840) comGG 3904781..3905152 (-) 372 WP_002129085.1 competence type IV pilus minor pilin ComGG -
  J5V93_RS19845 (J5V93_19845) comGF 3905149..3905610 (-) 462 WP_002129086.1 competence type IV pilus minor pilin ComGF -
  J5V93_RS19850 (J5V93_19850) - 3905594..3905890 (-) 297 WP_002129087.1 hypothetical protein -
  J5V93_RS19855 (J5V93_19855) comGD 3905940..3906338 (-) 399 WP_215563615.1 competence type IV pilus minor pilin ComGD -
  J5V93_RS19860 (J5V93_19860) comGC 3906335..3906634 (-) 300 WP_002088623.1 competence type IV pilus major pilin ComGC -
  J5V93_RS19865 (J5V93_19865) comGB 3906646..3907683 (-) 1038 WP_016096112.1 competence type IV pilus assembly protein ComGB -
  J5V93_RS19870 (J5V93_19870) comGA 3907670..3908713 (-) 1044 WP_002129093.1 competence type IV pilus ATPase ComGA Machinery gene
  J5V93_RS19875 (J5V93_19875) - 3908919..3909614 (+) 696 WP_002014995.1 helix-turn-helix domain-containing protein -
  J5V93_RS19880 (J5V93_19880) - 3909896..3910138 (+) 243 WP_002015110.1 DUF2626 domain-containing protein -
  J5V93_RS19885 (J5V93_19885) - 3910246..3911640 (+) 1395 WP_002138338.1 L-cystine transporter -
  J5V93_RS19890 (J5V93_19890) - 3911721..3912113 (-) 393 WP_002190672.1 hypothetical protein -
  J5V93_RS19895 (J5V93_19895) - 3912201..3912416 (-) 216 WP_002067106.1 DUF3912 family protein -
  J5V93_RS19900 (J5V93_19900) - 3912669..3912980 (+) 312 WP_002129099.1 hypothetical protein -
  J5V93_RS19905 (J5V93_19905) - 3913016..3913504 (-) 489 WP_002015119.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39294.76 Da        Isoelectric Point: 9.4642

>NTDB_id=550339 J5V93_RS19870 WP_002129093.1 3907670..3908713(-) (comGA) [Bacillus mycoides strain JAS06/1]
MNSVELFANMIMKEACRVRASDLHIVPRQKDVAIQLRIGKDLITKRCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQIDGQEVYLRLSTLPTVYQESLVIRLHLQASAQPLSHLSLFPSSTEKLLSFLKHSHGLLVFTGPTGSGKTTTMYALLEV
ARKWQTRRIITLEDPVEQRKDGLLQIQINEKAGITYKTGLKAILRHDPDIILVGEIRDEETAKVAVRASLTGHLVMTTLH
TNDAKGAILRFMDYGITRQEIEQSLLAVAAQRLVELKCPFCRGKCATLCKSMRKVRQASIYELLYGYELKQAIKEASGEH
VTYHYKTLESSVRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=550339 J5V93_RS19870 WP_002129093.1 3907670..3908713(-) (comGA) [Bacillus mycoides strain JAS06/1]
ATGAATAGTGTCGAGCTTTTTGCAAATATGATTATGAAAGAAGCTTGTAGGGTGCGAGCATCGGACTTACATATTGTGCC
CAGGCAGAAGGATGTGGCGATTCAATTACGTATTGGAAAAGATTTAATTACGAAACGGTGTATTGAGAAAGAATTTGGAG
AAAAGCTTGTTTCACACTTTAAATTTTTAGCATCAATGGATATAGGAGAGAGGAGAAAACCTCAAAATGGTTCGTTGTAC
TTACAAATTGATGGACAAGAAGTGTATTTACGCCTTTCAACACTTCCAACAGTATATCAAGAAAGTCTCGTTATTCGCCT
CCATTTACAAGCATCTGCTCAGCCGTTGTCTCACCTTTCGTTATTTCCAAGTTCAACGGAAAAATTACTCTCTTTTTTAA
AGCATTCGCATGGGTTACTCGTATTTACTGGGCCGACTGGTTCTGGAAAAACAACAACAATGTATGCGTTATTAGAAGTA
GCTAGAAAATGGCAAACACGTCGCATCATTACACTAGAAGATCCAGTTGAGCAAAGAAAAGACGGTTTATTACAAATTCA
AATAAATGAAAAAGCTGGTATCACATATAAAACAGGATTAAAGGCTATTTTGCGTCATGATCCAGATATTATTTTAGTTG
GCGAAATTCGTGATGAAGAAACAGCAAAAGTAGCTGTAAGGGCCAGTTTGACGGGACATTTAGTAATGACAACCTTGCAT
ACAAATGATGCGAAAGGAGCGATACTACGATTTATGGATTATGGTATTACAAGGCAAGAAATTGAACAATCATTATTAGC
AGTAGCTGCTCAGCGGCTCGTCGAATTAAAATGTCCATTTTGCAGAGGGAAGTGTGCAACTTTATGTAAATCAATGAGGA
AAGTGAGACAGGCAAGCATTTATGAACTGTTATATGGATATGAATTAAAACAAGCGATTAAAGAAGCAAGTGGAGAACAT
GTTACGTATCACTATAAAACGTTGGAATCGTCGGTTCGAAAAGGGTATGCTTTAGGCTTTTTAGAAGAAGATGTATATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S9TG17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.349

100

0.573
  pilB Glaesserella parasuis strain SC1401

42.955

83.862

0.36