Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   J5V73_RS20625 Genome accession   NZ_CP072057
Coordinates   4039115..4039909 (-) Length   264 a.a.
NCBI ID   WP_002015081.1    Uniprot ID   R8I3Q7
Organism   Bacillus mycoides strain JAS12/5     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4034115..4044909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5V73_RS20595 (J5V73_20590) - 4034333..4034791 (-) 459 WP_131246358.1 SMI1/KNR4 family protein -
  J5V73_RS20600 (J5V73_20595) - 4034887..4035336 (-) 450 WP_131246357.1 SMI1/KNR4 family protein -
  J5V73_RS20605 (J5V73_20600) - 4035351..4035803 (-) 453 WP_131246356.1 YrhA family protein -
  J5V73_RS20610 (J5V73_20605) - 4035959..4036531 (-) 573 WP_131246355.1 imm11 family protein -
  J5V73_RS20615 (J5V73_20610) - 4036570..4038234 (-) 1665 WP_131246354.1 AHH domain-containing protein -
  J5V73_RS20620 (J5V73_20615) - 4038555..4038950 (-) 396 WP_131246353.1 site-specific integrase -
  J5V73_RS20625 (J5V73_20620) spo0A 4039115..4039909 (-) 795 WP_002015081.1 sporulation transcription factor Spo0A Regulator
  J5V73_RS20630 (J5V73_20625) spoIVB 4040196..4041488 (-) 1293 WP_131246351.1 SpoIVB peptidase -
  J5V73_RS20635 (J5V73_20630) recN 4041608..4043347 (-) 1740 WP_002088564.1 DNA repair protein RecN Machinery gene
  J5V73_RS20640 (J5V73_20635) argR 4043618..4044067 (-) 450 WP_002015076.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29525.32 Da        Isoelectric Point: 7.1180

>NTDB_id=550291 J5V73_RS20625 WP_002015081.1 4039115..4039909(-) (spo0A) [Bacillus mycoides strain JAS12/5]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGIAYNGQECLNLLKEKQPDILVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKESATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=550291 J5V73_RS20625 WP_002015081.1 4039115..4039909(-) (spo0A) [Bacillus mycoides strain JAS12/5]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTGGTATCAATGCTAGAGAGTTATGTTGCTGCCCAAGA
TGATATGGAAGTTATCGGAATTGCTTACAATGGTCAAGAATGTTTAAACTTATTGAAAGAAAAGCAGCCTGATATACTCG
TTTTAGACATTATTATGCCACATTTAGATGGTCTAGCTGTGCTAGAGAAAATGCGACATATTGAAAGGTTAAGACAACCT
AGCGTTATTATGTTGACAGCATTCGGACAAGAAGATGTGACGAAAAAAGCGGTGGATTTAGGGGCATCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACAAGTCATATTCGTCAAGTTAGTGGTAAGGAAAGTGCTACTATTAAACGTCCAT
TACCATCTTTCCGATCAGCAACAACGATCGATGGAAAACCGAAAAACTTAGATGCGAGTATTACAAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGGTACATGTACTTACGAGAAGCAATCTCTATGGTGTACAATGATATCGAATTACT
AGGATCTATTACGAAAGTATTATATCCAGATATTGCAAAGAAATATAATACAACAGCAAGCCGTGTCGAGCGCGCAATCC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTTGGTTATACTGTATCCATGTCA
AAAGCAAAACCTACGAATTCCGAGTTCATCGCAATGGTTGCGGATAAGCTAAGACTTGAACATAAGGCTTCGTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8I3Q7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818