Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   LUY92_RS10520 Genome accession   NZ_CP089473
Coordinates   2113847..2114959 (-) Length   370 a.a.
NCBI ID   WP_407546400.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0.1239_III_ST239     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2108847..2119959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY92_RS10510 gyrA 2109197..2111866 (-) 2670 WP_000819067.1 DNA gyrase subunit A -
  LUY92_RS10515 gyrB 2111903..2113837 (-) 1935 WP_000255578.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  LUY92_RS10520 recF 2113847..2114959 (-) 1113 WP_407546400.1 DNA replication/repair protein RecF Machinery gene
  LUY92_RS10525 yaaA 2114956..2115201 (-) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  LUY92_RS10530 dnaN 2115582..2116715 (-) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  LUY92_RS10535 dnaA 2116993..2118354 (-) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  LUY92_RS10540 rpmH 2119085..2119222 (+) 138 WP_000240855.1 50S ribosomal protein L34 -
  LUY92_RS10545 rnpA 2119343..2119696 (+) 354 WP_001789343.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42393.38 Da        Isoelectric Point: 6.1893

>NTDB_id=550289 LUY92_RS10520 WP_407546400.1 2113847..2114959(-) (recF) [Staphylococcus aureus strain 0.1239_III_ST239]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDDEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=550289 LUY92_RS10520 WP_407546400.1 2113847..2114959(-) (recF) [Staphylococcus aureus strain 0.1239_III_ST239]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTAAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATGATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.378

100

0.584
  recF Streptococcus pneumoniae R6

49.33

100

0.497