Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   J5V73_RS09955 Genome accession   NZ_CP072057
Coordinates   1945762..1946049 (+) Length   95 a.a.
NCBI ID   WP_000648281.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS12/5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1940762..1951049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5V73_RS09935 (J5V73_09935) - 1941939..1942139 (+) 201 WP_002141377.1 DUF4083 domain-containing protein -
  J5V73_RS09940 (J5V73_09940) - 1942167..1942628 (+) 462 WP_002130989.1 NUDIX hydrolase -
  J5V73_RS09945 (J5V73_09945) nadE 1942673..1943491 (-) 819 WP_131245722.1 ammonia-dependent NAD(+) synthetase -
  J5V73_RS09950 (J5V73_09950) - 1943762..1945642 (+) 1881 WP_131245720.1 FtsX-like permease family protein -
  J5V73_RS09955 (J5V73_09955) abrB 1945762..1946049 (+) 288 WP_000648281.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  J5V73_RS09960 (J5V73_09960) - 1946385..1947335 (+) 951 WP_131245718.1 serine protease -
  J5V73_RS09965 (J5V73_09965) - 1947376..1947684 (-) 309 WP_001259916.1 helix-turn-helix transcriptional regulator -
  J5V73_RS09970 (J5V73_09970) - 1947792..1948727 (+) 936 WP_131245716.1 aldo/keto reductase -
  J5V73_RS09975 (J5V73_09975) - 1948777..1949952 (+) 1176 WP_131245714.1 MFS transporter -
  J5V73_RS09980 (J5V73_09980) - 1950138..1950362 (-) 225 WP_002012407.1 hypothetical protein -
  J5V73_RS09985 (J5V73_09985) - 1950447..1950794 (-) 348 WP_002202297.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10662.43 Da        Isoelectric Point: 5.8623

>NTDB_id=550282 J5V73_RS09955 WP_000648281.1 1945762..1946049(+) (abrB) [Bacillus mycoides strain JAS12/5]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIEGAK
HVIKEIEQFLKKSEI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=550282 J5V73_RS09955 WP_000648281.1 1945762..1946049(+) (abrB) [Bacillus mycoides strain JAS12/5]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGGATAGTTATTCCTAAAGAATTACGAGATGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCATACAATGCTT
GTCAAATAACAGGTGATGTTTCAGATCAAAATATTTCATTAGCAAATGGAAACATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAAAAAGAGTGAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.143

95.789

0.547